Table 2.
Summary of Replicate Experiments
|
Total samples analyzed in replicate |
13 |
| Total chips analyzed for replicate experiments | 26 |
| Within-chip reproducibility | |
| Mitochondrial base pairs tiled in duplicate per chip | 12,935 bp |
| Total within-chip duplicate base pairs analyzed | 26*12,935 = 336,310 bp |
| Total within-chip duplicate base pairs called | 311,814 bp (92.71%) |
| Discordant calls within chips | 8 bp (0.0025%) |
| Between-chips reproducibility | |
| Total mitochondrial base pairs tiled per chip | 28,386 bp |
| Total base pairs analyzed in one set of 13 chips | 13*28,386 = 369,018 bp |
| Total base pairs assigned in first set of chips | 350,010 bp (94.84%) |
| Total base pairs assigned in second set of chips | 355,086 bp (96.22%) |
| Total base pairs assigned in both sets | 345,094 bp (93.51%) |
| Discordant base calls between chips
|
10 bp (0.0028%)
|
