Table 5.
Duplicated NCBI RefSeq Genes Within Finished BACs
|
|
|
|
Exons |
|
|
||
|---|---|---|---|---|---|---|---|
| mRNA
|
Protein
|
Name
|
D
|
U
|
Best domain
|
Chr
|
|
| NM_007820 | NP_031846 | Cyp3a11 | 4 | 4 | p450 | 5 | |
| NM_007844 | NP_031870 | Defcr-rs1 | 2 | 0 | defensin propep | Un | |
| NM_007850 | NP_031876 | Defcr3 | 2 | 0 | defensins | Un | |
| NM_007851 | NP_031877 | Defcr5 | 2 | 0 | defensins | 8 | |
| NM_007852 | NP_031878 | Defcr6 | 2 | 0 | defensins | Un | |
| NM_008252 | NP_032278 | LOC330026 | 1 | 0 | HMG box | 6 | |
| NM_008459 | NP_032485 | Klra10 | 6 | 0 | lectin c | 6 | |
| NM_009051 | NP_033077 | Rex2 | 6 | 0 | KRAB | 4 | |
| NM_009243 | NP_033269 | Spi1-1 | 4 | 0 | serpin | 12 | |
| NM_009244 | NP_033270 | Spi1-2 | 4 | 0 | serpin | 12 | |
| NM_009246 | NP_033272 | Spi1-4 | 5 | 0 | serpin | 12 | |
| NM_009486 | NP_033512 | V2r11 | 2 | 2 | ANF receptor | 14 | |
| NM_009487 | NP_033513 | V2r11 | 3 | 2 | ANF receptor | Un | |
| NM_009489 | NP_033515 | V2r14 | 6 | 0 | ANF receptor | 7 | |
| NM_009490 | NP_033516 | V2r15 | 6 | 0 | Un | ||
| NM_009493 | NP_033519 | V2r4 | 6 | 0 | ANF receptor | Un | |
| NM_009529 | NP_033555 | Xmr | 9 | 0 | X | ||
| NM_010648 | NP_034778 | Klra3 | 7 | 0 | lectin c | 6 | |
| NM_010650 | NP_034780 | Klra8 | 6 | 0 | lectin c | 6 | |
| NM_011120 | NP_035250 | Plfr | 1 | 4 | hormone | 13 | |
| NM_011455 | NP_035585 | Spi13 | 6 | 0 | serpin | 13 | |
| NM_011456 | NP_035586 | Spi14 | 7 | 0 | serpin | 13 | |
| NM_013794 | NP_038822 | Klra1 | 1 | 6 | lectin c | 6 | |
| NM_014194 | NP_055009 | Klra7 | 3 | 0 | lectin c | 6 | |
| NM_017396 | NP_059092 | Cyp3a11 | 13 | 0 | p450 | 5 | |
| NM_021365 | NP_067340 | Xlr4 | 9 | 0 | X | ||
| NM_023743 | NP_076232 | Eif4enif1 | 2 | 17 | 11 | ||
| NM_026206 | NP_080482 | 1600017N11Rik | 6 | 0 | hormone | 13 | |
| NM_026492 | NP_080768 | 4930414C09Rik | 8 | 0 | KRAB | X | |
| NM_027017 | NP_081293 | 3300002I08Rik | 3 | 1 | KRAB | 2 | |
| NM_028561 | NP_082837 | 1700081O22Rik | 5 | 0 | Un | ||
| NM_029203 | NP_083479 | 4930539I12Rik | 4 | 0 | homeobox | X | |
| NM_031188 | NP_112465 | Mup1 | 7 | 0 | lipocalin | Un | |
| NM_031390 | NP_113567 | Pramel3 | 5 | 0 | X | ||
| NM_031493 | NP_113681 | Xlr5 | 6 | 0 | X | ||
| NM_053124 | NP_444354 | Smarca5 | 2 | 0 | helicase C | 4 | |
| NM_134252 | NP_599013 | Trpm8 | 4 | 21 | ion transport | 1 | |
| NM_145078
|
NP_659544
|
2610305D13Rik
|
2
|
0
|
|
4
|
|
-
Only the 38 RefSeq mRNAs containing duplicated (D) exons are listed. Overall, 0.50% (177/35,056) of exons from a total of 3834 RefSeq mRNAs within finished BACs were duplicated. Each gene was assigned the best-aligned domain by BLAST from the NCBI Conserved Domain Database (Methods). Chromosome assignment is based on BAC position within NCBI build30. The complete list of all 3834 genes is available (http://mouseparalogy.cwru.edu/).
