Table 2.
Human Versus Mouse Alignment Properties
|
|
Alignments |
Aligned bp |
Mean size |
Mean similarity |
|---|---|---|---|---|
| Human | 6552 | 171,310,564 | 26,146 | 95.6% |
| inter | 3144 | 76,197,373 | 24,236 | 95.0% |
| intra | 3408 | 95,113,191 | 27,909 | 96.1% |
| Mouse build29 | 241 | 5,636,773 | 23,389 | 94.1% |
| inter | 6 | 115,152 | 19,192 | 95.9% |
| intra | 235 | 5,521,621 | 23,496 | 94.1% |
| Mouse MGSCv3 | 732 | 10,041,877 | 13,718 | 94.7% |
| inter | 40 | 520,693 | 13,017 | 95.4% |
| intra | 267 | 4,137,586 | 15,497 | 93.4% |
| unknown
|
425
|
5,383,598
|
12,667
|
95.5%
|
-
Only alignments ≥10 kb were analyzed. MGSCv3 is the published version of the draft mouse genome. Build29 is a partial genome assembly based on finished C57BL/6J clones only. Aligned bp is the sum of aligned bases for all pairwise alignments, and thus, is a redundant measure of duplicated sequence relative to the genome.
