Table 1.
Summary of Rat RH V3.4 Maps
|
Chromosome |
Framework length (cR3000) |
# Framework markers |
Placement length (cR3000) |
# Total markers |
Genome sequence lengtha(Mb) |
# STSs per cR3000 |
cR3000/Mb |
# STSs per Mb |
Av. bin size (cR3000) |
Av. bin size (Mb) |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1681 | 98 | 1722 | 2951 | 268.12 | 1.7 | 6.42 | 11.0 | 17.6 | 2.74 |
| 2 | 1620 | 119 | 1663 | 1960 | 258.22 | 1.2 | 6.44 | 7.6 | 14.0 | 2.17 |
| 3 | 1519 | 89 | 1565 | 1639 | 170.97 | 1.0 | 9.15 | 9.6 | 17.6 | 1.92 |
| 4 | 1094 | 74 | 1134 | 1690 | 187.37 | 1.5 | 6.05 | 9.0 | 15.3 | 2.53 |
| 5 | 1182 | 81 | 1206 | 1823 | 173.11 | 1.5 | 6.97 | 10.5 | 14.9 | 2.14 |
| 6 | 924 | 57 | 954 | 1277 | 147.64 | 1.3 | 6.46 | 8.6 | 16.7 | 2.59 |
| 7 | 1090 | 74 | 1136 | 1591 | 143.08 | 1.4 | 7.94 | 11.1 | 15.4 | 1.93 |
| 8 | 1358 | 82 | 1358 | 1622 | 129.06 | 1.2 | 10.52 | 12.6 | 16.6 | 1.57 |
| 9 | 880 | 57 | 908 | 897 | 113.65 | 1.0 | 7.99 | 7.9 | 15.9 | 1.99 |
| 10 | 1214 | 67 | 1214 | 1190 | 110.73 | 1.0 | 10.96 | 10.7 | 18.1 | 1.65 |
| 11 | 704 | 40 | 733 | 706 | 87.80 | 1.0 | 8.35 | 8.0 | 18.3 | 2.20 |
| 12 | 794 | 48 | 823 | 789 | 46.65 | 1.0 | 17.64 | 16.9 | 17.1 | 0.97 |
| 13 | 770 | 38 | 800 | 831 | 111.35 | 1.0 | 7.18 | 7.5 | 21.1 | 2.93 |
| 14 | 782 | 41 | 826 | 682 | 112.22 | 0.8 | 7.36 | 6.1 | 20.1 | 2.74 |
| 15 | 743 | 48 | 791 | 721 | 109.77 | 0.9 | 7.21 | 6.6 | 16.5 | 2.29 |
| 16 | 789 | 45 | 820 | 850 | 90.22 | 1.0 | 9.09 | 9.4 | 18.2 | 2.00 |
| 17 | 833 | 51 | 879 | 901 | 97.31 | 1.0 | 9.03 | 9.3 | 17.2 | 1.91 |
| 18 | 832 | 51 | 852 | 775 | 87.34 | 0.9 | 9.76 | 8.9 | 16.7 | 1.71 |
| 19 | 726 | 41 | 754 | 627 | 59.22 | 0.8 | 12.73 | 10.6 | 18.4 | 1.44 |
| 20 | 517 | 22 | 562 | 594 | 55.30 | 1.1 | 10.17 | 10.7 | 25.6 | 2.51 |
| X | 941 | 42 | 990 | 321 | 160.78 | 0.3 | 6.16 | 2.0 | 23.6 | 3.83 |
| Total | 20991 | 1265 | 21688 | 24437 | 2719.92 | - | - | - | - | - |
| Average (Autosome)
|
-
|
-
|
-
|
-
|
-
|
1.1
|
8.87
|
9.6
|
17.6
|
2.10
|
-
↵a Genome lengths according to Release 3.1 (RGSPC)











