Table 1.
Comparison of the Exon-Based Synteny Map and Three-Way Alignments
|
Length of alignments (bp) |
Total number of alignments |
Number of alignments overlapping synteny maps |
Agreement between methods (%) |
Cumulative agreement (%)a |
Total size (Mb) |
Total size of disagreement (Mb) |
|---|---|---|---|---|---|---|
| >100 | 8080 | 7848 | 97.1 | 97.1 | 2243 | 59.0 |
| 50—100 | 432 | 301 | 69.7 | 95.7 | 33 | 9.4 |
| 10—50 | 474 | 157 | 33.1 | 92.4 | 12 | 7.3 |
| 1—10 | 613 | 80 | 13.1 | 87.4 | 1 | 0.9 |
| Total
|
9599
|
8386
|
87.4
|
n.a.
|
2289
|
77 (3.4%)
|
-
↵a Cumulative numbers show percentage alignments in agreement with the synteny map for a particular range summed up with higher-length ranges, for example 92.4% agreement was achieved for all alignments longer than 10 kb
