Pash: Efficient Genome-Scale Sequence Anchoring by Positional Hashing

(Downloading may take up to 30 seconds. If the slide opens in your browser, select File -> Save As to save it.)

Click on image to view larger version.

Figure 2
Figure 2

Flowchart of sequence comparison using Pash. Short, exactly matching k-mers are detected during Hashing and Inversion. Lists of proximal matching k-mers are collated to detect larger matches, which are assigned a score. An optional reciprocal match filter is then employed to increase specificity.

This Article

  1. Genome Res. 14: 672-678

Preprint Server



Current Issue

  1. March 2026, 36 (3)
  1. Current Issue
  1. Alert me to new issues of Genome Research