Table 1.

List of Available Maps Available in the Integrated Genomic Environment

Organism	Map type	Description	Number of markers	Reference
Rat	Genetic	FHH × ACl	2083	Steen et al. 1999
	Genetic	SHRSP × BN	3824	Steen et al. 1999
	RH	MCW version 2.1	10,733	Steen et al. 1999
	RH	MCW version 3.4	24,437	Kwitek et al. 2004
	Genome	MCW annotation of Build 3.1	27,389	See Methods
	Virtual	VCMap Build 8.6		Kwitek et al. 2001
	QTL	RGD QTLs linked to RH version 3.4	359 QTL	See Methods
	QTL	RGD QTLs linked to Genome, version 3.1	219 QTL	See Methods
	Cytogenetic	Cytogenetic bands and mapped genes	3,565	See Methods
Mouse	Genetic	MGI	15,667	Blake et al. 2003
	RH	WI/MIT R9	10,898	Hudson et al. 2001
	Genome	UCSC annotation from February 2003 build	36,736	Karolchik et al. 2003
	Virtual	VCMap Build 8.6		Kwitek et al. 2001
	QTL	MGD QTL	1,461 QTL	See Methods
Human	Genetic	Marshfield sex averaged	8,010	Broman et al. 1998
	Genetic	Marshfield male	8,010	Broman et al. 1998
	Genetic	Marshfield female	8,010	Broman et al. 1998
	Genetic	Genethon	5,264	Dib et al. 1996
	RH	Genemap99	45,756	Deloukas et al. 1998
	RH	Genemap98	38,322	Deloukas et al. 1998
	Genome	UCSC annotation from April 2003 build	150,046	Karolchik et al. 2003
	Virtual	VCMap Build 8.6		Kwitek et al. 2001
	Cytogenetic	Human cytogenetic bands plus OMIM morbid map	8755	McKusick and Amberger 1993

This is a comprehensive list of maps available at the time of submission. Additional maps can be suggested/submitted for inclusion on the public site; please contact RGD User Support (http://rgd.mcw.edu/contact/).

Integrative Genomics: In Silico Coupling of Rat Physiology and Complex Traits With Mouse and Human Data