Identification of Candidate Disease Genes by EST Alignments, Synteny, and Expression and Verification of Ensembl Genes on Rat Chromosome 1q43-54

Table 1.

Incyte EST-Inferred Gene Fragments Without Overlap to Ensembl Genes but With Syntenic Human Homologs and Protein Sequence


Gene ID

Chromosomal start coordinate

Number of splice sites

Number of clones

ORF length [aa]

BLAST hits to other speciesa
INCY:3591278 240,961,913 2 1 93 Hs, Mm, Cf
INCY:3591279 240,970,160 2 2 115 Hs, Mm, Cf
INCY:3591474 241,478,869 3 7 97 Hs, Mm, Cf
D1Mit34 242,893,444 - - - -
INCY:3591684 245,269,246 5 2 253 Hs, Mm, Cf
INCY:3591769 246,839,356 3 2 83 Hs, Mm, Cf
INCY:3592034 249,499,454 1 7 283 Hs, Mm, Cf
INCY:3592151 251,569,065 4 4 266 Hs, Cf
INCY:3592138 251,577,289 4 1 165 Hs, Mm
INCY:3592142 251,966,650 5 6 404 Hs, Mm, Cf, Mf
D1RAT156 253,994,157 - - - -
INCY:3592461 254,525,849 8 3 342 Hs, Mm, Cf
INCY:3592603 255,411,038 2 2 127 Hs
INCY:3592604 255,428,657 5 1 240 Hs
INCY:3592608 255,822,094 2 2 177 Hs, Mm, Cf
INCY:3592707 257,051,672 1 2 92 Hs, Mm
INCY:3592766 258,817,247 6 8 142 Hs, Mm, Cf
INCY:3592947 259,518,570 8 6 284 Hs, Mm, Cf
INCY:3592944
260,048,191
2
4
133
Mm
  • a (Hs) Human; (Mm) mouse; (Cf) dog

This Article

  1. Genome Res. 14: 640-650

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