Table 2.
Three-Way Human–Mouse–Rat Synteny Blocks of Size of Least 300 kb or 1 Mb in Human
|
|
Human |
Mouse |
Rat |
|---|---|---|---|
| Chromosomes included | 1—22, X | 1—19, X | 1—20, X |
| Total length (Mb) | 3020 | 2577 | 2720 |
| 300 kb three-way synteny blocks | |||
| # Blocks | 391 | 391 | 391 |
| Mean synteny block length (kb) | 6,702 | 5,994 | 6,358 |
| Maximum synteny block length (kb) | 79,235 | 64,310 | 71,003 |
| Total synteny block length (kb) | 2,620,531 | 2,343,664 | 2,486,156 |
| Total synteny block length (% of genome) | 86.79% | 90.94% | 91.41% |
| Mean breakpoint region length (kb) | 763 | 446 | 548 |
| Maximum breakpoint region length (kb) | 26,140 | 6,489 | 11,270 |
| Total breakpoint region length (kb) | 280,751 | 165,616 | 202,601 |
| Total breakpoint region length (% of genome) | 9.30% | 6.43% | 7.45% |
| 1 Mb three-way synteny blocks | |||
| # Blocks | 289 | 289 | 289 |
| Mean synteny block length (kb) | 9,225 | 8,156 | 8,643 |
| Maximum synteny block length (kb) | 79,879 | 64,895 | 71,394 |
| Total synteny block length (kb) | 2,666,132 | 2,357,154 | 2,497,941 |
| Total synteny block length (% of genome) | 88.30% | 91.46% | 91.84% |
| Mean breakpoint region length (kb) | 883 | 560 | 716 |
| Maximum breakpoint region length (kb) | 26,140 | 6,897 | 11,383 |
| Total breakpoint region length (kb) | 235,003 | 150,575 | 191,757 |
| Total breakpoint region length (% of genome)
|
7.78%
|
5.84%
|
7.05%
|
-
The lengths of breakpoint regions include those between synteny blocks, and exclude those at chromosome ends.
