Table 6.
Genes Within Rat Segmental Duplications
|
Accession |
Gene name |
Gene product |
Chrom |
txStart |
txEnd |
Exon count |
Exons hit |
Gene size |
# Dupbp |
|---|---|---|---|---|---|---|---|---|---|
| NM_181693 | Adam28 | A disintegrin and metalloprotease domain 28 | chr15 | 49036202 | 49100982 | 22 | 12 | 2357 | 1200 |
| NM_023103 | Mug1 | Alpha(1)-inhibitor 3, variant I | chr4 | 158528836 | 158582575 | 36 | 21 | 4656 | 2829 |
| NM_147214 | LOC259246 | Alpha-2μ globulin PGCL1 | chr5 | 78712436 | 78715858 | 7 | 7 | 878 | 878 |
| NM_147212 | LOC259244 | Alpha-2μ globulin PGCL3 | chr5 | 78094054 | 78171960 | 7 | 7 | 807 | 807 |
| NM_147215 | LOC259247 | Alpha-2μ globulin PGCL4 | chr5 | 78093991 | 78097430 | 7 | 7 | 1010 | 1010 |
| NM_147213 | LOC259245 | Alpha-2μ globulin PGCL5 | chr5 | 78686553 | 78689873 | 7 | 7 | 733 | 733 |
| NM_012718 | Andpro | Androgen regulated 20 kDa protein | chr3 | 137991232 | 137997597 | 4 | 4 | 828 | 828 |
| NM_032072 | Appbpl | APP-binding protein 1 | chr19 | 382555 | 408667 | 20 | 7 | 1780 | 692 |
| NM_012915 | Atpi | ATPase inhibitor | chr8 | 36902394 | 36905032 | 3 | 3 | 415 | 415 |
| NM_022281 | Abccl | ATP-binding cassette, sub-family C (CFTR/MRP) | chr10 | 452238 | 575705 | 31 | 13 | 4998 | 2360 |
| NM_031565 | Ces1 | Carboxylesterase 1 | chr19 | 14892725 | 14929187 | 14 | 11 | 1936 | 1389 |
| NM_133295 | Ces3 | Carboxylesterase 3 | chr19 | 14933410 | 14971894 | 14 | 14 | 1892 | 1892 |
| NM_144743 | LOC246252 | Carboxylesterase isoenzyme gene | chr19 | 37685 | 44736 | 12 | 12 | 1872 | 1872 |
| NM_181378 | Ctsm | Cathepsin M | chr17 | 8931467 | 8936876 | 8 | 8 | 1355 | 1355 |
| NM_031561 | Cd36 | CD36 antigen | chr4 | 13472462 | 13554416 | 13 | 12 | 2447 | 2285 |
| NM_153313 | CYP2D1 | Cytochrome P450 2D1 | chr7 | 120803930 | 120808335 | 9 | 9 | 1632 | 1632 |
| NM_017158 | Cyp2c39 | Cytochrome P450, 2c39 | chr1 | 243799046 | 244827001 | 9 | 3 | 1591 | 754 |
| NM_017158 | Cyp2c39 | Cytochrome P450, 2c39 | chr1 | 243935780 | 244719024 | 12 | 10 | 1737 | 1518 |
| NM_173304 | Cyp2d5 | Cytochrome P450CMF1b | chr7 | 120794663 | 120799170 | 9 | 9 | 1599 | 1599 |
| NM_022849 | Dmbt1 | Deleted in malignant brain tumors 1 | chr1 | 190539537 | 190620410 | 33 | 7 | 4360 | 1635 |
| NM_138902 | Loc192264 | Eosinophil cationic protein | chr15 | 27287836 | 27288707 | 2 | 2 | 713 | 713 |
| NM_053689 | Crfg | G protein-binding protein CRFG | chr17 | 72111731 | 72131468 | 17 | 11 | 1927 | 1267 |
| NM_181440 | Grp-Ca | Glutamine/glutamic acid-rich protein GRP-Ca | chr4 | 170757736 | 170828910 | 5 | 5 | 876 | 876 |
| NM_138517 | Gzmb | Granzyme B | chr15 | 35211149 | 35214166 | 5 | 5 | 1035 | 1035 |
| NM_019261 | Klrc2 | Killer cell lectin-like receptor subfamily C | chr4 | 167201553 | 167212693 | 7 | 6 | 1309 | 751 |
| NM_133421 | Lkap | Limkain b1 | chr10 | 826802 | 872214 | 28 | 27 | 7645 | 7519 |
| NM_152848 | Ly49i2 | Ly49 inhibitory receptor 2 | chr4 | 168584327 | 168608948 | 7 | 7 | 1522 | 1522 |
| NM_153726 | Ly49s3 | Ly-49 stimulatory receptor 3 | chr4 | 168268533 | 168454309 | 7 | 4 | 1401 | 932 |
| NM_173291 | Ly49 | Lymphocyte antigen 49 complex | chr4 | 168135002 | 168354511 | 9 | 9 | 1145 | 1145 |
| NM_134459 | Mic211 | MIC2 like 1 | chr15 | 5673663 | 5719158 | 11 | 4 | 4177 | 359 |
| NM_022247 | Pdcl | Phosducin-like protein | chr3 | 17003800 | 17012826 | 4 | 1 | 2303 | 1825 |
| NM_022241 | Ptgdr2 | Prostaglandin D2 receptor | chr15 | 19345554 | 19352929 | 2 | 2 | 1317 | 1317 |
| NM_080770 | Psbp1 | Prostatic steroid-binding protein 1 | chr1 | 212320755 | 212323535 | 3 | 3 | 518 | 518 |
| NM_173315 | LOC286981 | Putative pheromone receptor (Go-VN2) | chr1 | 71238505 | 71258976 | 6 | 2 | 3572 | 512 |
| NM-173318 | LOC286984 | Putative pheromone receptor (Go-VN4) | chr1 | 61650206 | 61748606 | 8 | 8 | 3650 | 3650 |
| NM_173320 | LOC286986 | Putative pheromone receptor Go-VN13C | chr18 | 34192 | 61266 | 6 | 5 | 3346 | 3111 |
| NM_173113 | VN1 | Putative pheromone receptor VN1 | chr4 | 124479450 | 124720930 | 2 | 1 | 1378 | 251 |
| NM_173298 | VN2 | Putative pheromone receptor VN2 | chr4 | 124479445 | 124487113 | 3 | 3 | 1663 | 1663 |
| NM_012646 | RT1-N1 | RT1 class 1b gene, H2-TL-like, grc region | chr20 | 278581 | 2789031 | 8 | 8 | 1186 | 1186 |
| NM_176076 | S100RVP | S100 calcium-binding protein | chr2 | 183684144 | 183687494 | 4 | 4 | 831 | 831 |
| NM_012657 | Spin2b | Serine protease inhibitor 2b | chr6 | 128383141 | 128390546 | 5 | 5 | 1669 | 1669 |
| NM_031664 | Slc28a2 | Solute carrier family 2, member 2 | chr3 | 109256103 | 109276805 | 17 | 17 | 2644 | 2644 |
| NM_053752 | Suclg1 | Succinate-CoA ligase, GDP-forming, alpha | chr8 | 36133697 | 36137263 | 4 | 4 | 476 | 476 |
| NM_133547 | Sult1c2 | Sulfotransferase family, cytosolic, 1C, member | chr9 | 1030810 | 1160809 | 7 | 4 | 2432 | 2029 |
| NM_058209
|
Zfp37
|
Zinc finger protein 37
|
chr5
|
78484370
|
79157374
|
6
|
3
|
2492
|
2167
|
-
aOnly genes within segmental duplications where the alignments were between 90%—99% identical are shown. A total of 63 genes were detected within duplications 90—100% identical. The number of exons (exons hit) and genic bases within the duplicated region (Dupbp) are indicated. Gene size is the sum of exon lengths from the rat genome assembly.
