Table 2.
Rat Segmental Duplication Sequence Alignment Statistics
|
|
Number of alignments |
Average sequence identity |
Average length |
||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Size (kb) |
Inter |
Intra |
All |
Inter |
Intra |
All |
Inter |
Intra |
All |
||||||
| 5 | 568 | 1265 | 1833 | 0.940 | 0.952 | 0.948 | 5631 | 5630 | 5631 | ||||||
| 6 | 1255 | 3769 | 5024 | 0.941 | 0.947 | 0.945 | 6528 | 6529 | 6529 | ||||||
| 7 | 1532 | 3968 | 5500 | 0.936 | 0.944 | 0.942 | 7496 | 7495 | 7495 | ||||||
| 8 | 1329 | 4501 | 5830 | 0.934 | 0.942 | 0.940 | 8506 | 8472 | 8480 | ||||||
| 9 | 1145 | 3487 | 4632 | 0.938 | 0.943 | 0.942 | 9533 | 9463 | 9481 | ||||||
| 10-19 | 4367 | 13550 | 17917 | 0.944 | 0.946 | 0.945 | 13376 | 13280 | 13303 | ||||||
| 20-29 | 673 | 1571 | 2244 | 0.950 | 0.953 | 0.952 | 23894 | 23601 | 23689 | ||||||
| 30-39 | 134 | 277 | 411 | 0.956 | 0.960 | 0.959 | 33183 | 33858 | 33638 | ||||||
| 40-49 | 33 | 70 | 103 | 0.965 | 0.964 | 0.964 | 44493 | 44211 | 44301 | ||||||
| 50+ | 34 | 69 | 103 | 0.979 | 0.967 | 0.971 | 59546 | 56850 | 57740 | ||||||
| Total
|
11070
|
32527
|
43597
|
0.941
|
0.946
|
0.944
|
11520
|
11253
|
11321
|
||||||
-
Alignments were binned into groups based on 1-kb increments (i.e., 5, 6 kb, etc) and 10 kb increments (i.e., 10-19.9 kb), the absolute number of alignments, average sequence identity, and average length for interchromosomal, intrachromosomal, and all alignments are shown after seed alignments were joined (see Methods). Consequently, the total number of joined alignments is less than the number of seed alignments (Table 1).
