Table 4.
MC Analysis With Simulations of Three-Way Alignments in Which Equal Branch Lengths Are Assumed in MC Analysis
|
Actual t1,2 and t(1,2)3 |
Observed t1,2 (ermse) |
Estimated t1,2 (ermse) |
Observed t(1,2)3 (ermse) |
Estimated t(1,2)3 (ermse) |
|---|---|---|---|---|
| 0.05 | 0.0500 (0.0138) | 0.0473 (0.0140) | 0.0531 (0.0178) | 0.0507 (0.0166) |
| 0.1 | 0.1017 (0.0282) | 0.0976 (0.0277) | 0.1006 (0.0211) | 0.0955 (0.0208) |
| 0.15 | 0.1521 (0.0280) | 0.1462 (0.0289) | 0.1403 (0.0290) | 0.1390 (0.0313) |
| 0.2 | 0.2136 (0.0340) | 0.2055 (0.0349) | 0.1797 (0.0381) | 0.1742 (0.0460) |
| 0.25 | 0.2757 (0.0519) | 0.2672 (0.0540) | 0.2258 (0.0371) | 0.2109 (0.0538) |
| 0.3
|
0.3068 (0.0412)
|
0.2984 (0.0510)
|
0.2520 (0.0546)
|
0.2600 (0.0599)
|
-
The internal and external branch lengths are equal (i.e., t1,2 and t(1,2)3), and alignment probability is evaluated under this model.
