Parallel Genotyping of Over 10,000 SNPs Using a One-Primer Assay on a High-Density Oligonucleotide Array

Table 3B.

Histograms of Heterozygosities and Minor Allele Frequencies Determined in 307 Individuals From 13 Ethnic Groups


Heterozygosity

Number of SNPs

% of SNPs

Minor allele frequency

Number of SNPs

% of SNPs
0 4 .03% 0% 4 .03%
≤0.05 63 .6% ≤1% 19 .2%
≤0.10 208 2.4% ≤5% 220 2.1%
≤0.15 379 5.7% ≤10% 723 8.4%
≤0.20 544 10.4% ≤15% 1050 17.4%
≤0.25 737 16.7% ≤20% 1311 28.8%
≤0.30 930 24.8% ≤25% 1416 41.0%
≤0.35 1202 35.2% ≤30% 1421 53.3%
≤0.40 1412 47.4% ≤35% 1362 65.1%
≤0.45 1826 63.2% ≤40% 1376 77.0%
≤0.50 4250 100.0% ≤45% 1352 88.7%



≤50%
1301
100.0%
  • Heterozygosity and minor allele frequency values for each SNP are reported in the Web Supplement (V. SNP Information).

This Article

  1. Genome Res. 14: 414-425

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