Whole Genome Sequence Comparisons and “Full-Length” cDNA Sequences: A Combined Approach to Evaluate and Improve Arabidopsis Genome Annotation

Table 5.

Comparison Between CDS From GSLT-Deduced and Annotated Gene Models




Annotated gene models with a CDS reduction

Annotated genes with no CDS reduction

Annotated genes Identical to GSLT models

Annotated genes with internal modifications proposed by GSLT models

Annotated genes with a proposed extension

Annotated genes with extension including additional exons
Group A 388 4904 142 178 107
5558 (7%) 5170 (94.9%) (2.7%) (3.4%) (2.1%)
Group B 306 890 298 425 272
1931
(15.8%)
1625
(54.8%)
(18.3%)
(26.1%)
(16.7%)
  • The sum is over 100%, as an annotated gene can belong to more than one category.

This Article

  1. Genome Res. 14: 406-413

Preprint Server