Table 1.
Call Rate and Accuracy of SARS Resequencing Array
|
Array sequence |
Discordant calls |
Ambiguous calls (Ns) |
Call rate |
Accuracy |
|---|---|---|---|---|
| SIN2500 | 3 | 495 | 98.33% | 99.989% |
| SIN2677 | 4 | 179 | 99.40% | 99.986% |
| SIN2679 | 0 | 138 | 99.53% | 100% |
| SIN2748 | 2 | 223 | 99.22% | 99.993% |
| Vero isolate 1 | 1 | 230 | 99.02% | 99.997% |
| Vero isolate 2 | 1 | 328 | 98.89% | 99.997% |
| Vero isolate 3 | 4 | 183 | 99.38% | 99.986% |
| Vero isolate 4 | 0 | 198 | 99.33% | 100% |
| Vero isolate 5 | 0 | 218 | 99.36% | 100% |
| Vero isolate 6 | 0 | 210 | 99.29% | 100% |
| Vero isolate 7 | 0 | 307 | 98.96% | 100% |
| Vero isolate 8 | 0 | 220 | 99.26% | 100% |
| Tissue 1-1 | 1 | 227 | 99.24% | 99.993% |
| Tissue 1-2 | 1 | 982 | 96.69% | 99.997% |
| Tissue 1-3 | 2 | 120 | 99.60% | 99.997% |
| Tissue 2
|
0
|
278
|
99.07%
|
100%
|
-
Discordant calls differ between array and ACS. Ambiguous calls refer to bases that lack sufficient information for high-confidence base assignment. Call rate is the percentage of genome sequence with high-confidence base calls. Accuracy is the percentage of correctly called bases (as determined by ACS) over the total number of bases called (excluding ambiguous calls). These results are based on duplicate hybridizations. Tissue 1 was hybridized on three pairs of arrays. The data for tissues 3 and 4 are not shown as ACS sequence is not available.
