Table 2.
Status of the Soybean Physical Map Before and After Manual Editing
|
|
Automatic contig assembly |
After manual editing |
|---|---|---|
| Date | Jan. 2002 | Aug. 2002 |
| Number of clones in FPC database | 78,001 | 78,001 |
| Number of singletons | 4933 | 4954 |
| Number of contigs | 4792 | 2905 |
| Contigs containing: | ||
| >200 clones | 0 | 6 |
| 101–200 clones | 0 | 88 |
| 51–100 clones | 21 | 321 |
| 26–50 clones | 1176 | 504 |
| 10–25 clones | 1606 | 920 |
| 3–9 clones | 1777 | 850 |
| 2 clones | 212 | 216 |
| Unique bands of the contigs | 364,570 | 346,884 |
| Physical length of the contigs in megabase pairs | 1480a | 1408a |
| DNA markers in the contigs
|
0
|
388
|
-
↵a Each fingerprint band was estimated to represent an average of 4.06 kb. It was estimated by the average insert size of the BAC and BIBAC clones divided by the average number of bands per clone used for the map contig assembly
