Table 1.
Reaction Coupling Statistics for the H. pylori, E. coli, and S. cerevisiae Metabolic Networks
|
|
H. pylori |
E. coli |
S. cerevisiae |
||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Biomass reaction
|
No biomass reaction
|
Biomass reaction
|
No biomass reaction
|
Biomass reaction
|
No biomass reaction
|
||||||||||||||||
|
|
Complex media
|
Glucose minimal
|
Complex media
|
Glucose minimal
|
Complex media
|
Glucose minimal
|
Complex media
|
Glucose minimal
|
Complex media
|
Glucose minimal
|
Complex media
|
Glucose minimal
|
|||||||||
| 19 (2) | 15 (2) | 25 (2) | 23 (2) | 45 (2) | 33 (2) | 48 (2) | 37 (2) | 51 (2) | 45 (2) | 51 (2) | 46 (2) | ||||||||||
| 8 (3) | 7 (3) | 10 (3) | 9 (3) | 9 (3) | 6 (3) | 9 (3) | 9 (3) | 13 (3) | 11 (3) | 14 (3) | 14 (3) | ||||||||||
| 2 (4) | 1 (5) | 3 (4) | 2 (4) | 4 (4) | 1 (4) | 4 (4) | 3 (4) | 6 (4) | 5 (4) | 7 (4) | 5 (4) | ||||||||||
| 1 (6) | 1 (7) | 1 (5) | 2 (5) | 3 (5) | 1 (5) | 5 (5) | 5 (5) | 2 (5) | 3 (5) | 2 (5) | 3 (5) | ||||||||||
| 2 (7) | 1 (10) | 2 (6) | 3 (6) | 2 (6) | 3 (7) | 2 (6) | 2 (6) | 2 (6) | 2 (6) | 2 (6) | 2 (6) | ||||||||||
| 1 (10) | 1 (174) | 3 (7) | 2 (7) | 1 (7) | 1 (10) | 2 (7) | 2 (7) | 1 (7) | 1 (7) | 1 (7) | 1 (7) | ||||||||||
| 1 (148) | 1 (8) | 1 (8) | 1 (8) | 1 (112) | 1 (8) | 1 (8) | 2 (8) | 2 (8) | 2 (8) | 2 (8) | |||||||||||
| 1 (9) | 1 (9) | 2 (9) | 3 (9) | 3 (9) | 1 (9) | 1 (9) | 1 (9) | 1 (9) | |||||||||||||
| 4 (10) | 4 (10) | 1 (66) | 1 (10) | 1 (10) | 1 (12) | 1 (12) | 1 (12) | 1 (12) | |||||||||||||
| 1 (13) | 1 (13) | 1 (17) | 1 (17) | 1 (30) | 1 (34) | 1 (17) | 1 (17) | ||||||||||||||
| 1 (20) | 1 (20) | ||||||||||||||||||||
| Total reactions in subsets: | 248 | 247 | 220 | 213 | 259 | 236 | 252 | 226 | 261 | 248 | 255 | 242 | |||||||||
| Total subsets:
|
34
|
26
|
52
|
49
|
68
|
46
|
76
|
64
|
80
|
72
|
82
|
76
|
|||||||||
-
The first number in each entry denotes the number of coupled sets; the number in parentheses is the size of the coupled set. For example, “19(2)” signifies that there are 19 coupled sets composed of two reactions.
