Table 3.
Polymorphic Alleles in SCK1/SL1 VNTRs
|
|
# Repeats |
Size (bp) |
N = 206 |
Frequency |
|
# Repeats |
Size (kb) |
N = 206 |
Frequency |
|---|---|---|---|---|---|---|---|---|---|
| VNTR1 | 1.7 | 130 bp | 2 | 0.010 | VNTR5 | 29.0 | 1.65 kb | 6 | 0.029 |
| 2.7 | 190 bp | 34 | 0.165* | 30.0 | 1.70 kb | 9 | 0.044 | ||
| 3.7 | 250 bp | 59 | 0.286 | 31.0 | 1.75 kb | 5 | 0.024 | ||
| 4.7 | 310 bp | 35 | 0.170 | 33.0 | 1.95 kb | 4 | 0.019 | ||
| 5.7 | 370 bp | 2 | 0.010 | 35.5 | 2.10 kb | 2 | 0.010 | ||
| 6.7 | 420 bp | 1 | 0.005 | 37.3 | 2.20 kb* | 16 | 0.078 | ||
| 8.7 | 540 bp | 2 | 0.010 | 38.3 | 2.25 kb | 4 | 0.019 | ||
| 9.7 | 615 bp | 70 | 0.340 | 39.3 | 2.30 kb | 4 | 0.019 | ||
| 11.0 | 720 bp | 1 | 0.005 | 41.0 | 2.40 kb | 4 | 0.019 | ||
| 42.0 | 2.45 kb | 3 | 0.015 | ||||||
| 43.0 | 2.50 kb | 4 | 0.019 | ||||||
| VNTR2 | 9.7 | 400 bp | 4 | 0.019 | 44.9 | 2.55 kb | 5 | 0.024 | |
| 12.7 | 500 bp | 43 | 0.209 | 46.7 | 2.65 kb | 21 | 0.102 | ||
| 13.7 | 540 bp | 12 | 0.058 | 47.7 | 2.80 kb | 7 | 0.034 | ||
| 14.7 | 570 bp | 60 | 0.291 | 49.5 | 2.90 kb | 5 | 0.024 | ||
| 15.7 | 600 bp | 80 | 0.388* | 51.3 | 3.00 kb | 17 | 0.083 | ||
| 16.7 | 640 bp | 4 | 0.019 | 53.0 | 3.10 kb | 10 | 0.049 | ||
| 17.7 | 680 bp | 3 | 0.015 | 55.0 | 3.20 kb | 4 | 0.019 | ||
| 57.0 | 3.30 kb | 6 | 0.029 | ||||||
| 58.0 | 3.35 kb | 4 | 0.019 | ||||||
| VNTR3 | 12.9 | 370 bp | 3 | 0.015 | 65.0 | 3.75 kb | 2 | 0.010 | |
| 13.9 | 400 bp | 59 | 0.286 | 69.0 | 4.00 kb | 5 | 0.024 | ||
| 14.9 | 430 bp | 54 | 0.262 | 75.0 | 4.30 kb | 25 | 0.121 | ||
| 15.9 | 460 bp | 3 | 0.015 | 77.0 | 4.40 kb | 17 | 0.083 | ||
| 18.9 | 560 bp | 87 | 0.422* | 83.0 | 4.70 kb | 11 | 0.053 | ||
| 85.0 | 4.80 kb | 4 | 0.019 | ||||||
| 87.0 | 4.90 kb | 2 | 0.010 | ||||||
| VNTR4 | 50.3 | 1.79 kb | 3 | 0.015 | |||||
| 51.3 | 1.85 bp | 185 | 0.898* | ||||||
| 60.3 | 2.30 kb | 17 | 0.083 | VNTR8 | 15.7 | 680 bp | 11 | 0.053* | |
| 63.3 | 2.45 kb | 1 | 0.005 | 16.7 | 720 bp | 195 | 0.947 | ||
| VNTR9 | 4.7 | 420 bp | 23 | 0.112 | VNTR11 | 41.7 | 1.03 kb | 2 | 0.010 |
| 6.7 | 550 bp | 10 | 0.049* | 42.7 | 1.06 kb | 2 | 0.010 | ||
| 7.7 | 620 bp | 173 | 0.840 | 43.7 | 1.08 kb | 4 | 0.019 | ||
| 44.7 | 1.10 kb | 198 | 0.961* | ||||||
| VNTR10 | 11.0 | 750 bp | 6 | 0.029 | |||||
| 11.7 | 800 bp | 162 | 0.786* | VNTR12 | 16.8 | 670 bp | 202 | 0.980* | |
| 12.7 | 860 bp | 2 | 0.010 | 18.8 | 730 bp | 3 | 0.015 | ||
|
|
16.0
|
1070 bp
|
36
|
0.175
|
|
19.8
|
760 bp
|
1
|
0.005
|
-
In bold are minisatellite alleles identified in a fosmid clone.
Asterisks show minisatellite alleles in a TAR isolate.
