Table 1B.
Abundantly Represented L1-Specific Transcriptsa
|
|
|
|
Nonredundant GenBank |
|
||||
|---|---|---|---|---|---|---|---|---|
|
|
Cluster |
ESTs per cluster |
Best identity descriptor |
Accession SW/TRb |
E-value |
C. elegans gene wormpep |
||
| 1 | SS00001.cl | 26 | C. elegans COL-6, cuticle collagen 6 | P18831 | 5e-134 | ZK1290.3 | ||
| 2 | SS01536.cl | 22 | C. elegans arginine kinase | Q10454 | 1e-145 | F46H5.3 | ||
| 3 | SS01533.cl | 21 | Brugia pahangi HSP 90, heat shock protein 90 | O61998 | 6e-234 | C47E8.5c | ||
| 4 | SS01520.cl | 18 | C. elegans H3, histone 3 | Q10453 | 8e-81 | F45E1.6 | ||
| 5 | SS00723.cl | 16 | C. elegans 40S ribosomal protein S16 | Q22054 | 2e-58 | T01C3.6 | ||
| 6 | SS01504.cl | 15 | C. elegans UNC-54, myosin heavy chain | O02244 | 2e-220 | F11C3.3 | ||
| 7 | SS00026.cl | 15 | Monodelphis domestica ribosomal protein S4 Y isoform | O62739 | 7e-90 | Y43B11AR.4c | ||
| 8 | SS01498.cl | 14 | C. elegans COL-10, cuticle collagen 10 | Q17460 | 1e-124 | B0222.8 | ||
| 9 | SS01492.cl | 14 | C. elegans cuticle collagen | Q20778 | 8e-29 | F54D8.1 | ||
| 10
|
SS01490.cl
|
14
|
C. elegans COL-1, cuticle collagen 1
|
Q19763
|
1e-134
|
F23H12.4
|
||
-
↵a Note: The two largest L1-specific clusters appear in Table 1A
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↵b SW/TR is SWISS-PROT and TrEMBL Proteinknowledgebase (http://us.expasy.org/sprot/)
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↵c C. elegans homolog present but with a lower probability match than the best GenBank descriptor
