Prevalent genes computed from cross-phylum analysis
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A: ubiquitous genes (total 34): |
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| argS | infB | pheS | rplN | secY | ||||
| dnaG | ksgA | proS | rpsB | serS | ||||
| dnaX | leuS | rplA | rpsC | thrS | ||||
| fusA | lysS | rplC | rpsD | trpS | ||||
| gcp | metG | rplE | rpsG | valS | ||||
| gltX | nusA | rplE | rpsH | ychF | ||||
| hisS | nusG | rplK | rpsM | |||||
| B: present in at least 90% of members from each phylum; add 26: | ||||||||
| alaS | map | recA | rpoC | rpsL | ||||
| atpD | pkg | rplB | rpsE | rpsN | ||||
| eno | pheT | rplM | rpsI | rpsS | ||||
| ftsH | pyrG | rplX | rpsJ | topA | ||||
| groEL | pyrH | rpoB | rpsK | trxB | ||||
| ileS | ||||||||
| C: present in at least 80% of members from each phylum; add 11: | ||||||||
| cysS | guaA | nth | rplV | uppS | ||||
| efp | lpdA | pepP | rpmC | yggV | ||||
| glyA
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Listed are consensus gene names (CGN) present in genomes from each of the 14 available phyla (12 bacterial, 2 archaeal) of 170 prokaryotes. (A) Present in all genomes from all phyla. Contrast with Table 3 (computed from 147 prokaryotes), where dnaX and rpsM are not included and where rpoB and tufA have dropped out. (B) Present in at least 90% of members from each phylum. Note that rpoB reappears in this list, but not tufA (due to a known annotation inconsistency). (C) Present in at least 80% of members from each phylum. (Note: lysS is a homonym for both class I and class II lysyl-tRNA synthetase genes ([Ibba et al. 1999], and thus represents a false positive entry.)
