Extensive and breed-specific linkage disequilibrium in Canis familiaris

Table 1.

Fraction of SNP pairs <100 kb apart and in significant linkage disequilibrium (D′ > 0.8; P < 0.01)



Dog breed

Locus on chromosome
AK
BM
GR
LB
PK
All breeds
   1 0.50 1.00 1.00 0.50 0.85 0.66
   2 0.82 0.95 0.86 1.00 1.00 0.93
   3 0.57 0.84 0.77 0.64 1.00 0.78
34 0.41 0.96 0.39 0.29 0.64 0.51
37 0.48 0.81 0.77 0.71 1.00 0.72
All loci
0.53
0.87
0.68
0.58
0.88
0.71
  • (AK) Akita; (BM) Bernese Mountain Dog; (GR) Golden Retriever; (LB) Labrador Retriever; (PK) Pekingese.

This Article

  1. Genome Res. 14: 2388-2396

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