Table 2.
Sizes and P-values of selected subfamilies
|
Subfamily |
Size |
P-value |
|---|---|---|
| AluJo | 7,266 | 8e-1841 |
| AluSx | 39,724 | 6e-4770 |
| AluSq | 4,035 | 2e-62 |
| AluSp | 28,063 | 7e-4520 |
| AluY | 27,023 | 2e-6924 |
| AluYa5 | 3,257 | 4e-2813 |
| AluSx_3 | 3,292 | 8e-1841 |
| AluSx_5 | 401 | 3e-150 |
| AluSq_3 | 1,956 | 2e-779 |
| AluSg_4 | 1,904 | 1e-679 |
| AluSc_8 | 9,588 | 1e-5959 |
| AluY_8
|
107
|
1e-48
|
-
We list the size and P-value for each of the 12 subfamilies whose aligned consensus sequences are listed in Figure 2. Some Repbase Update subfamilies, particularly the AluSq subfamily, contain fewer elements in our allocation of Alu elements to subfamilies than in the allocation of Alu elements to Repbase Update subfamilies only, because many elements have been reallocated to neighboring subfamilies not in Repbase Update.
