1274 Full-Open Reading Frames of Transcripts Expressed in the Developing Mouse Nervous System

Table 3A.

Top 52 NIH_BMAP Transcripts Most Distinctively Expressed in the Brain

UniGene cluster
No. of brain ESTs in cluster (adult and embryonic)
Percentage of brain ESTs in cluster (brain specificity)
No. of embryonic brain ESTs in cluster
Percentage of embryonic brain ESTs (embryonic specificity
UniGene description
Mm.296323 5 100 2 40 Similar to zinc finger protein 334
Mm.337426 5 100 2 40 Transcribed sequence with weak similarity to protein pir:I68600 (H. sapiens) I68600 dipeptidyl aminopeptidase like protein—human
Mm.334249 4 100 4 100 Transcribed sequence with weak similarity to protein ref:NP_079090.1 (H. sapiens) hypothetical protein FLJ23109; likely ortholog of mouse E-cadherin binding protein E7 [H. sapiens]
Mm.334408 2 100 2 100 Transcribed sequences
Mm.353170 2 100 1 50 Transcribed sequence with strong similarity to protein ref:NP_116220.1 (H. sapiens) CAP-binding protein complex interacting protein 2 [H. sapiens]
Mm.223128 1 100 0 0 olfactory receptor MOR202-8
Mm.249245 1 100 0 0 Mus musculus 13d embryo head cDNA, RIKEN full-length enriched library, clone:3110006O06 product:unclassifiable, full insert sequence
Mm.97163 42 95.45 12 28.57 cerebellin 3 precursor protein
Mm.44245 90 90.91 53 58.89 adenylate cyclase activating polypeptide 1 receptor 1
Mm.248796 287 90.25 28 9.76 sulfotransferase family 4A, member 1
Mm.326240 37 90.24 5 13.51 copine IV
Mm.320206 51 89.47 6 11.76 calneuron 1
Mm.270641 169 88.95 35 20.71 hippocalcin-like 4
Mm.4920 139 87.97 42 30.22 glutamate receptor, ionotropic, AMPA1 (α1)
Mm.242088 36 87.8 12 33.33 adenosine deaminase, RNA-specific, B2
Mm.279818 107 87.7 11 10.28 RIKEN cDNA 3110035E14 gene
Mm.44413 92 87.62 16 17.39 RIKEN cDNA 1500003N10 gene
Mm.276408 183 87.14 113 61.75 kinesin family member 1A
Mm.268079 106 86.89 60 56.6 chondroitin sulfate proteoglycan 3
Mm.298251 25 86.21 6 24 leucine-rich repeat LGI family, member 1
Mm.35474 177 85.92 33 18.64 stathmin-like 4
Mm.333266 6 85.71 4 66.67 Transcribed sequence with weak similarity to protein sp:O60721 (H. sapiens) NKX1_HUMAN Sodium/potassium/calcium exchanger 1 precursor (Na+/K+/Ca2+-exchange protein 1) (Retinal rod Na-Ca+K exchanger)
Mm.261168 101 85.59 11 10.89 potassium inwardly-rectifying channel, subfamily J, member 9
Mm.42823 65 84.42 36 55.38 RIKEN cDNA 6530413N01 gene
Mm.103811 43 84.31 19 44.19 protocadherin 8
Mm.39752 137 84.05 19 13.87 RIKEN cDNA 2900041A09 gene
Mm.40741 42 84 17 40.48 RIKEN cDNA 9630019K15 gene
Mm.229330 141 83.93 100 70.92 seizure-related gene 6
Mm.121274 78 83.87 12 15.38 RIKEN cDNA 9630048M01 gene
Mm.44473 10 83.33 8 80 Transcribed sequences
Mm.196944 78 82.98 38 48.72 RIKEN cDNA 6330404E20 gene
Mm.240965 71 82.56 24 33.8 expressed sequence N28178
Mm.246605 102 82.26 21 20.59 RIKEN cDNA 4930471K13 gene
Mm.308525 55 82.09 22 40 T-box brain gene 1
Mm.252890 18 81.82 7 38.89 hypothetical protein 5330438O12
Mm.27005 120 81.63 22 18.33 visinin-like 1
Mm.41708 80 81.63 20 25 leucine-rich repeat LGI family, member 3
Mm.103502 51 80.95 17 33.33 RIKEN cDNA 5730507A09 gene
Mm.35088 51 79.69 35 68.63 cholinergic receptor, nicotinic beta polypeptide 2 (neuronal)
Mm.349133 11 78.57 7 63.64 Transcribed sequence with weak similarity to protein sp:Q9Y2JO (H. sapiens) RP3A_HUMAN Rabphilin-3A
Mm.334237 46 77.97 5 10.87 Mus musculus cDNA clone IMAGE:6593004, with apparent retained intron
Mm.332656 7 77.78 3 42.86 Transcribed sequence with moderate similarity to protein pir:T00390 (H. sapiens) T00390 KIAA0614 protein—human (fragment)
Mm.113877 30 76.92 3 10 glycine receptor, α2 subunit
Mm.256342 208 76.75 115 55.29 kinesin family member 5C
Mm.289702 273 76.69 60 21.98 synaptotagmin 1
Mm.32191 209 76.56 68 32.54 gamma-aminobutyric acid (GABA-B) receptor, 1
Mm.241147 32 76.19 6 18.75 solute carrier family 8 (sodium/calcium exchanger), member 2
Mm.19047 60 75 36 60 RIKEN cDNA 9330157P13 gene
Mm.331076 15 75 4 26.67 Similar to neuronal transmembrane protein Slitrk3
Mm.149738 6 75 1 16.67 Similar to hypothetical protein
Mm.323867 3 75 0 0 Similar to CAP-binding protein complex interacting protein 1
Mm.329662
3
75
2
66.67
Similar to beta-galactose-3-O-sulfo-transferase 3; Gal3ST-3

This Article

  1. Genome Res. 14: 2053-2063

Preprint Server



Current Issue

  1. January 2026, 36 (1)
  1. Current Issue
  1. Alert me to new issues of Genome Research