Predicting Subcellular Localization via Protein Motif Co-Occurrence

Table 8.

Most Widely Used InterPro Motifs


InterPro entry identifier

InterPro entry name

No. of proteins

No. of compartments
IPR000694 Proline-rich region 190 9
IPR005225 Small GTP-binding protein domain 28 6
IPR003593 AAA ATPase domain 28 6
IPR002110 Ankyrin repeat 20 5
IPR000719 Protein kinase 69 5
IPR001478 PDZ/DHR/GLGF domain 16 5
IPR000379 Esterase/lipase/thioesterase active site 22 5
IPR005834 Haloacid dehalogenase-like hydrolase 13 5
IPR001687
ATP/GTP-binding site motif A (P-loop)
12
5

This Article

  1. Genome Res. 14: 1957-1966

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