Predicting Subcellular Localization via Protein Motif Co-Occurrence

Table 6.

Number of Human Proteins Predicted in Each Subcellular Compartment or Pair of Compartments Considered




ER

Golgi

Cytosol

Nuclear

Pero

PM

Lyso

Mito

Secreted
ER 413 (5.6)
Golgi 45 (0.6) 125 (1.7)
Cytosol 12 (0.2) 9 (0.1) 1168 (15.9)
Nuclear 13 (0.2) 15 (0.2) 550 (7.5) 2003 (27.2)
Pero 6 (0.1) 0 (0) 22 (0.3) 6 (0.1) 53 (0.7)
PM 93 (1.3) 8 (0.1) 8 (0.1) 3 (<0.1) 0 (0) 1256 (17.1)
Lyso 16 (0.2) 5 (0.1) 0 (0) 0 (0) 16 (0.2) 1 (<0.1) 84 (1.1)
Mito 24 (0.3) 0 (0) 82 (1.1) 8 (0.1) 23 (0.3) 2 (<0.1) 2 (<0.1) 247 (3.4)
Secreted
9 (0.1)
1 (<0.1)
8 (0.1)
20 (0.3)
0 (0)
160 (2.2)
5 (0.1)
5 (0.1)
840 (11.4)
  • Percentage of predictable proteins predicted to be in each compartment or compartment pair is shown in parentheses.

    Pero indicates peroxisome; PM, plasma membrane; Lyso, lysosome; and Mito, mitochondrion.

This Article

  1. Genome Res. 14: 1957-1966

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