Predicting Subcellular Localization via Protein Motif Co-Occurrence

Table 4.

Available Experimental Confirmation Concerning 25 Proteins With Localization That Is Not Agreed Upon by the PSLT Prediction and the LIFEdb GFP Annotation




Correct LIFEdb GFP annotationa

Correct PSLT predictionb

Bothc

Neitherd
Protein count (%)
3 (12%)
18 (72%)
2 (8%)
2 (8%)
  • a Proteins with annotation in the LIFEdb data set that agrees with the information available in the literature.

  • b Proteins with localization predicted by PSLT that agrees with the information in the literature.

  • c Proteins with annotation in the LIFEdb data set and PSLT predicted localization that are confirmed in the literature.

  • d Proteins with annotation in the LIFEdb data set and PSLT predicted localization that both disagree with information in the literature.

This Article

  1. Genome Res. 14: 1957-1966

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