Table 4.
miRNAs in Introns of Noncoding Transcription Units
|
microRNA |
Chroma |
Human host TU IDb |
Mouse host TU IDb |
miRNA locationc |
Host transcript description |
|---|---|---|---|---|---|
| let-7a-2, miR-100, -125b-1 | 11 (9) | ENSESTG00000015836 | ENSMUSESTG00000011922 | Intron 2 (4) | Novel mlncRNA |
| let-7d | 9 (13) | OTTHUMG00000020259 | Intron 3 | Vega mlncRNA | |
| miR-7-2 | 15 (7) | ENSMUSESTG00000007393 | Intron 1 | Novel mlncRNA | |
| miR-15a, -16-1 | 13 (14) | OTTHUMG00000016927 | 1810047A1 6Rik | Intron 4 | DLEU2 mlncRNA |
| miR-30a, -30a*, -30c-2 | 6 (1) | ENSESTG00000011458 | Intron 3 | Novel mlncRNA | |
| miR-31 | 9 (4) | OTTHUMG00000019681 | Intron 1 | Novel mlncRNA | |
| miR-129-2 | 11 (2) | 11_43541975 AceView | Intron 1 | Novel mlncRNA | |
| miR-132, -212 | 17 (11) | ENSMUSESTG00000011295 MBuild 30 | Intron 1 | Novel mlncRNA | |
| miR-135a-1 | 3 (9) | 3_52291509 AceView | Novel mlncRNA | ||
| miR-135a-2 | 12 (10) | 196475 NCBI | ENSMUSESTG00000002435 | Intron 9 (1) | NCRMS mlncRNA |
| miR-135b | 1 (1) | ENSESTG00000002491 | ENSMUSESTG00000018175 | Intron 1 | Novel mlncRNA |
| miR-141, -200c | 12 (6) | ENSMUSESTG00000015291 MBuild30 | Intron 1 | Novel mlncRNA | |
| miR-154 | 14 (12) | ENSMUSESTG00000016217 | Intron 2 | Novel mlncRNA | |
| miR-181a, -181b-2 | 9 (2) | OTTHUMG00000020657 | Intron 1 | Vega mlncRNA | |
| miR-181b-1, -213 | 1 (1) | ENSMUSESTG00000012306 | Intron 2 | Novel mlncRNA | |
| miR-194-1 | 1 (1) | 2010103J01Rik | Intron 1 | Riken mlncRNA | |
| miR-302 | 4 (3) | 4_114030028 AceView | Intron 2 | Novel mlncRNA | |
| miR-325
|
—(X)
|
|
ENSMUSESTG00000006551
|
Intron 1
|
Novel mlncRNA
|
-
↵a The human chromosome is listed first followed by the mouse chromosome in parentheses.
-
↵b Transcript IDs are from ENSEMBL, Vega, FANTOM2, NCBI, or Acembly AceView.
-
↵c Intron positions for miRNAs in transcript are listed. If the human/mouse positions are different, the mouse location is presented in parentheses.
