Table 3.
Families of miRNAs Found in Introns of Related Protein-Coding Genes
|
Family |
Mouse host gene IDa |
Human host gene IDa |
Host gene descriptionb |
microRNA |
Related miRNAsc |
|---|---|---|---|---|---|
| Coatomer | ENSMUSG00000035994 MBuild30 | ENSG00000111481 | COATOMER ZETA-1 SUBUNIT (ZETA-1 COAT PROTEIN) (ZETA-1 COP) (CGI-120) (HSPC181), COPZ1 [Source: SWISS-PROT (Q9Y3C3)] | miR-148b | + |
| ENSMUSG00000018672 | ENSG00000005243 | COATOMER ZETA-2 SUBUNIT (ZETA-2 COAT PROTEIN) (ZETA-2 COP). COPZ2 [Source: SWISS-PROT; Acc: Q9P299] | miR-152 | + | |
| GABA | ENSMUSG00000031343 | ENSG00000011677 | GAMMA-AMINOBUTYRIC-ACID RECEPTOR ALPHA-3 SUBUNIT PRECURSOR (GABA(A) RECEPTOR). GABRA3 [Source: SWISS-PROT; Acc: P34903] | miR-105-1, -105-2 | − |
| ENSMUSG00000031340 | ENSG00000102287 | GAMMA-AMINOBUTYRIC-ACID RECEPTOR EPSILON SUBUNIT PRECURSOR (GABA(A) RECEPTOR). GABRE [Source: SWISS-PROT; Acc: P78334] | miR-224 | − | |
| NIF | ENSMUSG00000038995 | ENSG00000144677 | NUCLEAR LIM INTERACTOR-INTERACTING FACTOR 1 (NLI-INTERACTING FACTOR 1) (NIF-LIKE PROTEIN) (YA22 PROTEIN) (HYA22), NIF1_HUMAN (C3orf8) [Source: SWISS-PROT; Acc: O15194] | miR-26a-1 | + |
| ENSMUSG00000040540 | ENSG00000175215 | NUCLEAR LIM INTERACTOR-INTERACTING FACTOR 2 (NLI-INTERACTING FACTOR 2) (PROTEIN OS-4). NIF2_HUMAN [Source: SWISS-PROT; Acc: O14595] | miR-26a-2 | + | |
| ENSMUSG00000026176 | ENSG00000144579 | NUCLEAR LIM INTERACTOR-INTERACTING FACTOR 3 (NLI-INTERACTING FACTOR 3) (NLI-IF). NIF3_HUMAN [Source: SWISS-PROT; Acc: Q9GZU7] | miR-26b | + | |
| LIM | ENSMUSG00000033306 | ENSG00000145012 | LIM DOMAIN CONTAINING PREFFERED TRANSLOCATION PARTNER IN LIPOMA; LIM DOMAIN-CONTAINING PREFERRED TRANSLOCATION PARTNER IN LIPOMA; LIPOMA-PREFFERRED-PARTNER GENE. LPP [Source: RefSeq; Acc: NM_005578] | miR-28 | − |
| ENSG00000163995 | ACTIN BINDING LIM PROTEIN 2. ABLIM2 [Source: RefSeq; Acc: NM_032432] | miR-95 | − | ||
| PANK | ENSMUSG00000033610 | OTTHUMG00000018718/ENSG00000152782 | PANTOTHENATE KINASE 1 (EC 2.7.1.33) (PANTOTHENIC ACID KINASE 1) (HPANK1) (HPANK). [Source: SWISS-PROT; Acc: Q8TE04] | miR-107 | + |
| ENSMUSG00000034220 | OTTHUMG00000031768/ENSG00000125779 | PANTOTHENATE KINASE 2, MITOCHONDRIAL PRECURSOR (EC 2.7.1.33) (PANTOTHENIC ACID KINASE 2) (HPANK2). [Source: SWISS-PROT; Acc: Q9BZ23] | miR-103-2 | + | |
| ENSMUSG00000018846 | ENSG00000120137 | PANTOTHENATE KINASE 3 (EC 2.7.1.33) (PANTOTHENIC ACID KINASE 3) (HPANK3). [SOURCE: SWISS-PROT; ACC: Q9H999] | miR-103-1 | + | |
| SLIT | 20563 NCBI | ENSG00000145147 | SLIT HOMOLOG 2 PROTEIN PRECURSOR (H-SLIT-2). SLIT2 [Source: SWISS-PROT; Acc: O94813] | miR-218-1 | + |
| 20564 NCBI | ENSG00000184347 | SLIT HOMOLOG 3; SLIT3 [Source: RefSeq; Acc: NM_003062] | miR-218-2 | + | |
| PTPRN | ENSG00000054356 | PROTEIN-TYROSINE PHOSPHATASE-LIKE N PRECURSOR (R-PTP-N) (PTP IA-2) (ISLET CELL ANTIGEN 512) (ICA 512) (ISLET CELL AUTOANTIGEN 3), PTPRN [Source: SWISS-PROT; Acc: Q16849] | miR-153-1 | + | |
| ENSMUSG00000054701 | ENSG00000155093 | RECEPTOR-TYPE PROTEIN-TYROSINE PHOSPHATASE N2 PRECURSOR (EC 3.1.3.48) (R-PTP-N2) (ISLET CELL AUTOANTIGEN RELATED PROTEIN) (ICAAR) (IAR) (PHOGRIN). PTPRN2 [Source: SWISS-PROT; Acc: Q92932] | miR-153-2 | + | |
| TRPM | ENSMUSG00000030523 | ENSG00000134160 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 1; MELASTATIN 1. TRPM1 [Source: RefSeq; Acc: NM_002420] | miR-211 | + |
|
|
ENSMUSG00000024763
|
ENSG00000083067
|
LONG TRANSIENT RECEPTOR POTENTIAL CHANNEL 3 (LTRPC3) (FRAGMENT), TRPM3 [Source: SWISS-PROT; Acc: Q9HCF6]
|
miR-204
|
+
|
