Table 2.
miRNAs in Introns of Protein-Coding Genes
|
microRNAa |
Mouse host gene IDb |
Human host gene IDb |
Host gene protein descriptionc |
miRNA positiond |
|---|---|---|---|---|
| miR-7-3 (miR-7b) | ENSG00000176840 | PITUITARY GLAND SPECIFIC FACTOR 1A. [Source: RefSeq; Acc: NM_174947] | Intron 2 | |
| miR-10b | ENSMUSG00000038692 | ENSG00000170166 | HOMEOBOX PROTEIN HOX-D4(HOX-4B) (HOX-5.1) (HHO.C13). {Source: SWISS-PROT (P09016)] | Intron 4 |
| miR-15b, -16-2 | ENSMUSG00000034349 | ENSG00000113810 | STRUCTURAL MAINTENANCE OF CHROMOSOMES 4-LIKE 1 PROTEIN (CHROMOSOME-ASSOCIATED POLYPEPTIDE C) (HCAP-C) (XCAP-C HOMOLOG). SMC4L1 [Source: SWISS-PROT; Acc: Q9NTJ3] | Intron 4 |
| miR-25, -93, -106b | ENSMUSG00000029730 | OTTHUMG00000023308/ENSG00000166508 | DNA REPLICATION LICENSING FACTOR MCM7 (CDC47 HOMOLOG) (P1.1-MCM3). [Source: SWISS-PROT; Acc: P33993] | Intron 13 |
| miR-30c-1 and -30e | ENSMUSG00000032897 | ENSG00000066136 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA (NF-Y PROTEIN CHAIN C) (NUCLEAR FACTOR YC) (NF-YC) (CCAAT-BINDING TRANSCRIPTION FACTOR SUBUNIT C) (CBF-C) (TRANSACTIVATOR HSM-1/2). NFYC [Source: SWISS-PROT; Acc: Q13952] | Intron 5 |
| miR-33 | ENSMUSG00000022463 | OTTHUMG00000030492/ENSG00000100152 | STEROL REGULATORY ELEMENT BINDING PROTEIN-2 (SREBP-2) (STEROL REGULATORY ELEMENT-BINDING TRANSCRIPTION FACTOR 2). SREBF2 [Source: SWISS-PROT; Acc: Q12772] | Intron 15 (16) |
| miR-101-2 (miR-101b) | ENSMUSG00000024785 | OTTHUMG00000019474/ENSG00000120158 | RNA 3′-TERMINAL PHOSPHATE CYCLASE-LIKE PROTEIN (HSPC338), RCL1_HUMAN [Source: SWISS-PROT; Acc: Q9Y2P8] | Intron 8 |
| miR-126, 126* | ENSMUSG00000026921 | OTTHUMG00000020938/ENSG00000172889 | EGF-LIKE DOMAIN 7; NEU1 PROTEIN, NOTCH4-LIKE PROTEIN (VASCULAR ENDOTHELIAL ZINC FINGER 1) [Source: RefSeq; Acc: NM_178444] | Intron 6 (7) |
| miR-128b | ENSMUSG0000032503 | ENSG00000076062 | CAMP-REGULATED PHOSPHOPROTEIN 21 (ARPP-21) (SWISS-PROT: AP21_HUMAN) | Intron 11 (17) |
| miR-139 | ENSMUSG00000030653 | ENSG00000186642 | CGMP-DEPENDENT 3′,5′-CYCLIC PHOSPHODIESTERASE (EC 3.1.4.17) (CYCLIC GMP STIMULATED PHOSPHODIESTERASE) (CGS-PDE) (CGSPDE), PDE2A [Source: SWISS-PROT; Acc: O00408] | Intron 2 (1) |
| miR-140 | ENSMUSG00000031930 | ENSG00000088481 | NEDD-4-LIKE UBIQUITIN-PROTEIN LIGASE WWP2 (EC 6.3.2.-) (WW DOMAIN-CONTAINING PROTEIN 2) (ATROPIN-1 INTERACTING PROTEIN 2) (AIP2). WWP_2HUMAN [Source: SWISS-PROT; Acc: O00308] | Intron 15 (16) |
| miR-149 | ENSMUSG00000034220 | ENSG00000063660 | GLYPICAN-1 PRECURSOR, GPC1 [Source: SWISS-PROT; Acc: P35052] | Intron 1 |
| miR-151 | ENSMUSG00000022607 | ENSG00000169398 | FOCAL ADHESION KINASE 1 (EC 2.7.1.112) (FADK 1) (PP125FAK) (PROTEIN-TYROSINE KINASE 2). FAK1 [Source: SWISS-PROT (Q05397)] | Intron 19 (25) |
| miR-188 | ENSMUSG00000004317 | ENSG00000171365 | CHLORIDE CHANNEL PROTEIN 5 (CLC-5), CLCN5 [Source: SWISS-PROT; Acc: P51795] | Intron 3 (2) |
| miR-190 | ENSMUSG00000035702 | ENSG0000017194 | TALIN 2. TLN 2 [Source: SWISS-PROT; Acc: Q9Y4G6] | Intron 51 (27) |
| miR-207 (human miR-207 not found) | ENSMUSG00000028410 | DNAJ HOMOLOG SUBFAMILY A MEMBER 1 (HEAT SHOCK 40 KDA PROTEIN 4) (DNAJ PROTEIN HOMOLOG 2) (HSJ-2), DJA1_MOUSE [Source: SWISS-PROT; Acc: P54102] | Intron 1 | |
| miR-208 | ENSMUSG00000040752 | OTTHUMG00000028753/ENSG00000166094 | MYOSIN HEAVY CHAIN, CARDIAC MUSCLE ALPHA ISOFORM (MYHC-ALPHA), MYH6 [Source: SWISS-PROT; Acc: P13533] | Intron 28 (29) |
| miR-335 | ENSMUSG00000051855 | ENSG00000106484 | MESODERM SPECIFIC TRANSCRIPT ISOFORM A; PATERNALLY EXPRESSED GENE 1. MEST [Source: RefSeq (NM_002402)] | Intron 2 (1) |
| miR-338 | ENSMUSG00000025375 | ENSG00000181409 | APOPTOSIS-ASSOCIATED TYROSINE KINASE. AATK [Source: RefSeq; Acc: NM_007377] | Intron 5 (7) |
| miR-339 | ENSMUSG00000029533 | ARSENITE INDUCIBLE RNA ASSOCIATED PROTEIN. (AIRAP) AA407930 [Source: RefSeq; Acc: NM_133349] | Intron 1 | |
| miR-340 | ENSMUSG00000020376 | ENSG00000113269 | RING FINGER PROTEIN 130; GOLIATH PROTEIN; G1-RELATED ZINC FINGER PROTEIN, RNF130 [Source: RefSeq (NM_018434)] | Intron 2 (2) |
| miR-342 | ENSMUSG00000021262 | OTTHUMG00000029003/ENSG00000089465 | ENA/VASODILATOR STIMULATED PHOSPHOPROTEIN-LIKE PROTEIN (ENA/VASP-LIKE PROTEIN). EVL [Source: SWISS-PROT (Q9UI08)] | Intron 3 |
| miR-346
|
14803 NCBI
|
OTTHUMG00000018650/ENSG00000182771
|
SIMILAR TO GLUTAMATE RECEPTOR, IONOTROPIC, DELTA 1. GRID1 [Source: SPTREMBL (Q8IXT3)]
|
Intron 2 (1)
|
-
↵a miRNA names listed in parentheses refer to the mouse name if different from the human.
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↵b Gene IDs are from ENSEMBL, Vega, or NCBI.
-
↵c Protein descriptions are for the human gene.
-
↵d Intron positions for miRNAs in gene are listed. If the human/mouse positions are different, the mouse location is presented in parentheses.
