Variation in Number of SDP Observed at Different Genomic Regions and in Different Sets of Inbred Strains
|
Genomic region |
Strains (#) |
Observed # of SDPs |
Excess # of SDPs |
# of SDPS with variants segregating across subspecies |
|---|---|---|---|---|
| Complete dataset | All (20) | 164 (569) | 127 | n. a. |
| Complete dataset | Non hybrids (10) | 60 (481) | 43 | 26 (49) |
| Cct6b-Ap2b1 | All (20) | 83 (309) | 46 | n. a. |
| Cct6b-Ap2b1 | Non hybrids (10) | 44 (266) | 27 | 18 (34) |
| Il9r | All (19) | 41 (127) | 6 | n. a. |
| Il9r
|
Non hybrids (9)
|
17 (108)
|
2
|
4 (6)
|
-
Shown is the genomic region, the strains used in the analysis, the observed number of SDP, the excess number of SDP, and the number of SDP that segregate across M. musculus subspecies. Parentheses show the number of variants used to define the SDP. Excess number of SDP is the difference between the observed number of SDP and the maximum number of SDP that may be observed in a set of n strains if variants are identical by descent; there is no gene flow between branches, and all variation occurred after the divergence of the subspecies. (n. a.) Not applicable.
