Genes That Are Most Correlated With yjaX's Expression Pattern Across All 116 Experiments
|
Genea |
Gene descriptionb |
Pathwayc |
RyjaXd |
Se |
Locationf |
Operong |
|---|---|---|---|---|---|---|
| yjaX | fabHA: 3-oxoacyl-acyl-carrier protein synthase III A | FAS | 1 | 21.2 | — 70 | 1 |
| yjaY | fabF: 3-oxoacyl-acyl-carrier protein synthase II | FAS | 0.8481 | 21.2 | 1 | |
| yhfB | fabHB: 3-oxoacyl-acyl-carrier protein synthase III B | FAS | 0.7798 | 17.2 | — 51 | 2* |
| gltT | H+/Na+-glutamate symport protein | 0.7405 | 3 | |||
| fabD | Malonyl CoA-acyl carrier protein transacylase | FAS | 0.7253 | 16.7 | 4 | |
| accB | Acetyl-CoA carboxylase (biotin carboxyl carrier subunit) | FAS | 0.7147 | 5 | ||
| yhdO | plsC: 1-acylglycerol-3-phosphate O-acyltransferase | PLS | 0.7007 | 15.5 | — 72 | 6* |
| ylpC | Unknown; similar to unknown proteins | 0.6731 | 16.7 | — 34 | 4 | |
| fabG | β-ketoacyl-acyl carrier protein reductase | FAS | 0.6624 | 16.7 | 4 | |
| yxlF | Similar to ABC transporter (ATP-binding protein) | 0.6601 | 7* | |||
| panD | Aspartate 1-decarboxylase | PAN | 0.6412 | 8 | ||
| yjbW | fabl: enoyl-acyl-carrier protein reductase | FAS | 0.6360 | 17.9 | — 17 | 9* |
| panB | Ketopantoate hydroxymethyltransferase | PAN | 0.6356 | 8 | ||
| ylmB | Similar to acetylornithine deacetylase | 0.6318 | 10 | |||
| plsX | Involved in fatty acid/phospholipid synthesis | PLS | 0.6279 | 16.7 | 4 | |
| yraK | Predicted hydrolase/acyl-transferase | 0.6277 | ||||
| azlD | Branched-chain amino acid transport | 0.6271 | ||||
| ykoK | Similar to Mg2+ transporter | 0.6224 | ||||
| yobL | Unknown; similar to unknown proteins from B. subtilis | 0.6214 | ||||
| yrhI
|
Unknown; similar to transcriptional regulator (TetR/AcrR family)
|
|
0.6188
|
|
|
|
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↵a The commonly used gene name
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↵b A description of the gene product's function
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↵c The genes already known to be involved in type II FAS and connected pathways (PAN, pantothenate biosynthesis; PLS, phospholipid biosynthesis)
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↵d The correlation coefficient RyjaX
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↵e The similarity score S for possible transcription-factor-binding sites in upstream sequences of the coregulated transcriptional units (averages of the scores S arising from matches with the palindromic motif on both DNA strands, see Methods), bold numbers indicating the operon head genes
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↵f The genomic location of the those motifs, counted in base pairs upstream from the translation-start codon of the operon head gene
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↵g The references to corresponding transcription units, with same numbers indicating the same operons (see text). A superscript star indicates isolated genes, without neighboring genes being coexpressed
