Table 3.
Percentages of Genes in Buchnera and E. coli Orthologs Located on the Leading (vs. Lagging) Strand for Three Classes of Increasing Codon Adaptive Index in E. coli, and in Ribosomal Proteins Plus GroEL/S
|
|
Buchnera-Aps |
Buchnera-Sgr |
Buchnera-Bpl |
E. coli K12 |
||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
n |
% leading strand |
n |
% leading strand |
n |
% leading strand |
n |
% leading strand |
||||
| CAI-Eco <0.35 | 170 | 50.0% | 165 | 49.1% | 139 | 51.1% | 173 | 59.0% | ||||
| 0.35 < CAI-Eco <0.65 | 328 | 56.4% | 310 | 56.5% | 302 | 57.0% | 339 | 67.5% | ||||
| CAI-Eco >0.65 | 57 | 66.7% | 56 | 67.9% | 55 | 67.3% | 58 | 81.0% | ||||
| groEL/S + ribosomal
|
56
|
78.6%
|
56
|
78.6%
|
56
|
78.6%
|
56
|
92.9%
|
||||
-
The average for all E. coli genes is 55% (Blattner et al. 1997).
