A Whole-Genome Mouse BAC Microarray With 1-Mb Resolution for Analysis of DNA Copy Number Changes by Array Comparative Genomic Hybridization

Table 1.

Comparison of the Frequencies of the 3′ Hexanucleotide Anchors of DOP-PCR Primers in Mouse and E. coli Genomic Sequences
Number of matches per kilobase
Primer
 Sequencea
 M. musculus
 E. coli
 RatiobMm/Ec
M-DOP1 CCGACTCGAGNNNNNNCTAGAG 0.523 0.014 331.7
M-DOP2 CCGACTCGAGNNNNNNCTAGAA 0.579 0.020 254.7
M-DOP3 CCGACTCGAGNNNNNNCTAGGT 0.338 0.014 217.8
6MW
CCGACTCGAGNNNNNNATGTGG
0.662
0.396
1.67

  • ↵a Bold characters indicate 3′ end hexamer sequence

  • ↵b Mm, M. musculus; Ec, E. coli

This Article

  1. Genome Res. 14: 188-196

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