1-Mb Resolution Array-Based Comparative Genomic Hybridization Using a BAC Clone Set Optimized for Cancer Gene Analysis

Table 1.

Clone Collections by Source
Clone numbers
Source
 Initial collectiona
 Post-alignment filterb
 Optimized setc
The BAC Resource Consortium (Cheung et al. 2001) 3304 2454 2135
Wellcome Trust Sanger Institute (S. Gregory) 144 45 36
BAC-PAC Resource (CHORI) 355 330 320
NCI-Cancer Chromosome Aberration Projectd 276 188 174
Cedar Sinai Medical Center (J. Korenberg) 196 165 144
TIGR (S. Zhao) 0 0 1325
Total
4275
3182
4134

  • ↵a The number of clones received from each source. These include 130 duplicates

  • ↵b The number of clones after filtering each set for misaligned and ambiguously mapped clones

  • ↵c The aligned, quality adjusted 1 Mb resolution clone set containing 402 cancer-related genes

  • ↵d http://cgap.nci.nih.gov/Chromosomes/CCAP

This Article

  1. Published in Advance December 12, 2003, doi: 10.1101/gr.1847304 Genome Res. 14: 179-187

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