Table 1.
Data Sets in EnsMart An `(F)' Indicates Focus Data Set
|
Species |
Category |
Data set |
Primary source |
|---|---|---|---|
| Homo sapiens | Genomic | Ensembl genes (F) | Ensembl |
| EST genes (F) | Ensembl | ||
| Vega genes (F) | VEGA | ||
| SNP (F) | dbSNP/HGVbase | ||
| Markers | UCSC | ||
| Disease | OMIM morbid map | OMIM | |
| Expression | eVOC | SANBI | |
| GNF | Novartis | ||
| EST | dbEST | ||
| Protein annotation | InterPro | Ensembl | |
| Pfam | Ensembl | ||
| Prosite | Ensembl | ||
| PRINTS | Ensembl | ||
| PROFILE | Ensembl | ||
| FAMILY clusters | Ensembl | ||
| Mus musculus | Genomic | Ensembl genes (F) | Ensembl |
| EST genes (F) | Ensembl | ||
| SNP (F) | dbSNP | ||
| Markers | MGI | ||
| Protein annotation | As for Homo sapiens | Ensembl | |
| Rattus norvegicus | Genomic | Ensembl genes (F) | Ensembl |
| EST genes (F) | Ensembl | ||
| SNP (F) | MDC | ||
| Markers | RMR/WTCHG | ||
| Disease | QTL | RGD | |
| Protein annotation | As for Homo sapiens | Ensembl | |
| Caenorhabditis elegans | Genomic | WormBase Genes (F) | AceDB |
| Protein annotation | As for Homo sapiens | Ensembl | |
| Caenorhabditis briggsae | Genomic | Ensembl genes (F) | Ensembl |
| Protein annotation | As for Homo sapiens | Ensembl | |
| Danio rerio | Genomic | Ensembl genes (F) | Ensembl |
| Markers | EMBL STS | ||
| Protein annotation | As for Homo sapiens | Ensembl | |
| Fugu rubripes | Genomic | Ensembl genes (F) | IMCB |
| Protein annotation | As for Homo sapiens | Ensembl | |
| Anopheles gambiae | Genomic | Ensembl genes (F) | Ensembl |
| SNP (F) | Ensembl | ||
| Markers | Anobase | ||
| Protein annotation | As for Homo sapiens | Ensembl | |
| Drosophila melanogaster | Genomic | FlyBase genes (F) | FlyBase |
|
|
Protein annotation
|
As for Homo sapiens
|
Ensembl
|
