Table 6.
Timing and Memory Usage
|
Genome |
Genome size |
# of contigs |
# of mates |
Scaffolder component |
Execution time |
Maximum memory |
|---|---|---|---|---|---|---|
| Bacillus anthracis | 5.2 Mbases | 4,739 | 39,489 | ALL | 2m46s | 74 MB |
| C++ | 19s | 74 MB | ||||
| Drosophila pseudoobscura | 140 Mbases | 45,872 | 1,018,385 | ALL | 59m22s | 1.4 GB |
| C++ | 2m56s | 465 MB | ||||
| Canis familiaris | 2900 Mbases | 1,944,009 | 2,696,416 | ALL | 4h32m16s | 6.2 GB |
|
|
|
|
|
C++
|
55m27s
|
4.2 GB
|
-
The data are separated into ALL—aggregate for a complete run of Bambus and C++-data for the C++ component of the code. The dog data is a worst-case scenario due to the low coverage (1.5 ×) and the fact that singleton contigs were included in the analysis.
