Table 3.
Alignment Statistics
|
|
Celera assembler |
Arachne |
||||||||
|---|---|---|---|---|---|---|---|---|---|---|
|
|
Good |
Mis-asm. |
No match |
Good |
Mis-asm. |
No match |
||||
| B. suis | 65 | 3 | 3 | 76 | 0 | 1 | ||||
| S. oneidensis | 626 | 12 | 94 | 907 | 7 | 10 | ||||
| S. aureus | 717 | 1 | 62 | 588 | 1 | 19 | ||||
| S. epidermidis | 47 | 6 | 19 | 69 | 2 | 10 | ||||
| Wolbachia
|
83
|
24
|
958
|
139
|
5
|
533
|
||||
-
Good, contigs that confirmed the reference; mis-asm, disagreements between a particular assembly and the reference—these are likely mis-assemblies in the assembly; no match, the number of contigs that did not align to the reference—most likely contaminants (e.g., Wolbachia is known to have a large amount of Drosophila contamination) or small mis-assembled contigs.
