Table 1.
Mapping of the Ciona intestinalis Mitochondrial-Like Contigs Inferred From EST Sequences on the Corresponding Complete mtDNA Sequence (AJ517314)
|
|
Contig |
mtDNA |
|
||||||
|---|---|---|---|---|---|---|---|---|---|
|
|
No. EST |
L (bp) |
From.. .To |
% Id |
Gap |
Genesa |
|||
| Link2/Ci-4 | 2 | 719 | 8177.. .8894 | 98.6 | 1 | 16S rRNA partial | |||
| Link2/Ci-11 | 30 | 945 | 6797.. .7740 | 99.6 | — | ND1 end + Nc | |||
| Link2/Ci-12 | 25 | 464 | 8915.. .9369 | 99.1 | — | I partial + ND3 + E | |||
| Ci-1 | 309 | 1646 | 11306.. .12909 | 99.2 | — | S2 partial + CO1 + Nc | |||
| Ci-36 | 525 | 3215 | 3459.. .6663 | 99.0 | 2 | A partial + CO2 + Cytb + P + ND4L + H + R + Q + CO3 + Nc | |||
| Ci-5 | 38 | 1689 | 1757.. .3434 | 99.6 | 1 | ATP6 partial + ND2 + Nc | |||
| Ci-8 | 35 | 1533 | 9456.. .10958 | 99.6 | — | ND4 + F + ATP8 | |||
| Ci-10 | 25 | 1697 | 13044.. .14724 | 99.3 | 6 | ND5 partial | |||
| Total | 989 | 11908 | 99.3 | 10 | |||||
| Ci-9 | 3 | 620 | 12452.. .13074 | 99.3 | 2 | partial 16Sb | |||
| Link1/Ci-2 | 2 | 677 | 7799.. .8455 | 98.6 | 2 | CO2 endc | |||
| Link1/Ci-7
|
2
|
974
|
3337.. .4294
|
91.2
|
—
|
ND2 endc
|
|||
-
For each link/contig are shown matching coordinates and percent identity (% Id) with the mtDNA of Ciona intestinalis.
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↵a tRNA genes are named with the one-letter code of the charged amino acid.
-
↵b Comparison with Halocynthia roretzi mtDNA (AB024528).
-
↵c Comparison with Paracentrotus lividus mtDNA (J04815).
