Table 3.
Coverage and Sizes for the Test Data Sets
|
|
Number of expressways |
Number of clones in expressways |
Average positive overlap of clones in expressways |
Average negative overlap of clones in expressways |
Average expressway length |
||
| Simulated (unmasked) | 31 | 145 | 1.7 kb | 3.4 kb | 687 kb | ||
| Simulated (masked) | 35 | 142 | 1.8 kb | 4.1 kb | 605 kb | ||
| Syngenta | 37 | 132 | 4.9 kb | 8.4 kb | 452 kb | ||
| BGI | 40 | 104 | 3.0 kb | 1.5 kb | 321 kb | ||
| Monsanto
|
17
|
35
|
5.2 kb
|
6.2 kb
|
273 kb
|
||
| Data set
|
Number of junctions
|
Number of gaps
|
Average length of junctions
|
Average length of gaps
|
Number of bad pairs
|
Coverage
|
|
| Simulated (unmasked) | 2 | 21 | 53 kb | 50 kb | 11 | 82% | |
| Simulated (masked) | 5 | 23 | 56 kb | 62 kb | 4 | 81% | |
| Syngenta | 10 | 27 | 41 kb | 103 kb | ? | 80% | |
| BGI | 7 | 32 | 23 kb | 168 kb | ? | 62% | |
| Monsanto
|
1
|
16
|
12 kb
|
400 kb
|
?
|
24%
|
|
