Locating Sequence on FPC Maps and Selecting a Minimal Tiling Path

Table 2.

Summary of Test Data


Data

Coverage

Average size

Comments
FPC map Redundancy Clone No. contigs
    simulated 20× 135,000 41
    rice 20× 135,000 20
BES Genome BES % of clones
    simulated 20% 675 100
    rice 18% 690 89
Draft Genome seqCtg No. seqctg
    Simulated 85%b 4.1 kb 4745
    Monsantoa 53%b 4.2 kb 2882
    Syngentaa 91%b (93%)c 12 kb 1729
    BGI
84%b (92%)c
2.9 kb
127,561
  • a Only seqCtgs assigned to chromosome 10 by Monsanto and Syngenta, respectively.

  • b Computed assuming unique seqCtgs and a chromosome 10 size of 22.4 Mb.

  • c Published coverage.

This Article

  1. Genome Res. 13: 2152-2163

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