Whole-Genome Shotgun Optical Mapping of Rhodobacter sphaeroides strain 2.4.1 and Its Use for Whole-Genome Shotgun Sequence Assembly

Table 3.

Problematic Alignments of the Chromosome I Hind III Optical and In Silico Maps



Contig 215 Contig 217


Contig 217 Contig 183


Contig 189 Contig 125

Contig 103 Contig 222
Optical map
Locus 1
Optical map
Locus 2
Optical map
Locus 3
Locus 4
23.07 22.77 - 35.58 36.17 - 10.52 10.62 - - -
25.8 25.7 - 21.7 21.51 - 9.87 8.92 - - -
19.13 18.94 - 22.55 22.6 - 27.36 11.42 15.31 - -
2.92 1.47 - 9.81 9.44 - - - 0.54 - -
3.01 0.41 - 34.42 35.04 12.9 7.89 - 7.58 - -
3.74 2.18 - 2.61 2.87 2.11 10.34 - 10.14 - -
2.19 2.43 - 3.15 3.18 2.88 52.81 - 1.53 19.12 30.33
3.43 1.13 - 3.14 0.5 3.17 7.8 - - - 7.36
2.01 0.64 - 8.51 - 8.33 56.29 - - - 56.29
2.97 0.4 1.49 64.21 - 66.45 9.22 - - - 9.22
3.77 - 3.29 27.41 - 27.57 4.34 - - - 4.34
25.83 - 26.15 13.24 - 12.25 28.49 - - - 28.49
53.03
-
54.34
32.14
-
31.94
59.2
-
-
-
59.2
  • Significant differences are bolded.

This Article

  1. Genome Res. 13: 2142-2151

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