Table 1.
The 52 Grass Genes Used for CNS Analysis
|
Gene locus name |
Name of gene product |
Maize GenBank accession |
Locus name in maize |
Rice GenBank/TMRI accession |
|---|---|---|---|---|
| abi4 | AP2 domain transcription factor | AY125490 | ABA insensitive 4 | CLC22051 |
| adh1 | alcohol dehydrogenase | AF123535 | alcohol dehydrogenase1 | AF172282 |
| alt1 | alanine aminotransferase | AF055898 | alanine aminotransferase1 | AAAA01000312.1 |
| amy2 | beta amylase | AF068119.1 | beta amylase2 | HTC0096333-A01.R.4.4 |
| bt2 | ADP glucose pyrophosphorylase | AF334959 | brittle endosperm2 | AAAA01001202.1 |
| bx8 | UDP-glucosyltransferase | AF331854 | benzoxazinoid resistant 8 | AL606615.2 |
| cat3 | catalase | L05934 | catalase3 | AAAA01004939 |
| ckx1 | cytokinin oxidase | AF044603 | cytokinin oxidase | AAAA01000072 |
| dek1 | calpain-like membrane protein | AY061804 | defective kernel1 | CLC1853 |
| dhy1 | dehydrin-like protein | AF314251 | dehydrin-like1 | AAAA01000476.1 |
| fad7 | fatty acid desaturase | D63954 | fatty acid desaturase7 | AAAA01001919 |
| fd3 | ferredoxin III | AB001387 | ferredoxin3 | CL003093.85 |
| fd6 | ferredoxin VI | AB001386 | ferredoxin6 | CL006554.354 |
| g2 | putative transcription factor | AF298118 | golden2 | AP002855 |
| gcn5 | histone acetyltransferase | AJ428542 | maize GCN5 (yeast) homolog | AF229187 |
| gl8 | beta ketoacyl CoA reductase | AF302098 | glossy8 | AAAA01000778.1 |
| gn1 | Knotted1-like homeobox transcription factor | AY312168 | gnarley | CL033612.103 |
| gpa1 | glycerald. 3-phosph. Dehydrog. A subun. | X15408 | glyc.-3-Ph. dH, A sub. | AAAA01001985 |
| gpc1 | glyceraldehyde 3 phosphate dehydrogenase, cytosolic, C subunit | X15596 | glyc.-3-Ph. dH, C sub. | CL027672.49 |
| hsbp1 | heat shock binding protein (empty pericarp2) | AF494285 | heat shock protein binding protein1 | CL034628.160 |
| incw3 | cell wall invertase | AF043346 | cell wall invertase 3 | CL032573.44 |
| incw4 | cell wall invertase | AF043347 | cell wall invertase 4 | AF155121 |
| kn1 | Knotted1 homeobox transcription factor | AY312169 | knotted1 | CL020544.98 |
| lrs1 | liguleless2-related transcription factor | AY180107 | lg2-related sequence1 | AP003794 |
| lkrsdh | lysine ketoglutarate reductase/saccharopine dehydrogenase | AF271636 | lysine ketoglutarate reductase/saccharopine dehydrogenase | AAAA01003034.1 |
| mis1 | aldehyde dehydrogenase, disease upregulated | AF467541 | maize homolog of fis1 | AAAA01000475.1 |
| mlip15 | cold-upregulated bZIP transcription factor | D63956 | low temperature induced protein | CLB2912.4 |
| mpcbp | calmodulin binding protein | AF250191 | calmodulin binding protein | CL006707.158 |
| noi | nitrate induced protein | AF030385 | nitrate induced | HTC032618-A0.F.66.6 |
| nr1 | nitrate reductase | AF153448 | nitrate reductase1 | CLB8272.5 |
| o2 | O2 | X15544 | opaque endosperm2 | AAAA01000962 |
| ole16 | oleosin (16 kD) | U13701 | oleosin, 16 kD | CL024588.71.8 |
| ole18 | oleosin (18 kD) | U13702 | oleosin, 18 kD | AF019212 |
| pdc2 | pyruvate decarboxylase | AF370004 | pyruvate decarboxylase2 | AAAA01000307.1 |
| pdc3 | pyruvate decarboxylase | AF370006 | pyruvate decarboxylase3 | CL039322.220 |
| pep1 | phosphoenolpyruvate carboxylase | E17154 | PEPCase, cytosol. C4 | AAAA01003016 |
| phyt2 | acidic phytase II | AJ223471 | phytase 2 | AL662942.2 |
| psei1 | cystein proteinase inhibitor | D63342 | cystatin1 | HTC027330-A01.122 |
| rr1 | cytokinin-inducible response regulator 1 | AB031011 | response regulator1 | AAAA01005417.1 |
| sbe1 | starch branching enzyme I | AF072724 | branching enzyme1 | HTC116571-A01.R.5.5 |
| sh1 | sucrose synthase-1 | X02382 | shrunken1 | X64770 |
| sh2 | ADP glucose pyrophosphorylase, 60kD | M81603 | shrunken2 | CL034645.143.17 |
| su1 | starch debranching enzyme I | AF030882 | sugary1 (isoamylase) | AAAA01000810 |
| sus1 | sucrose synthase-2 | L33244 | sucrose synthase | X59046 |
| tb1 | teosintebranched1 transcription factor | AF464738 | teosintebranched1 | AAAA01001682.1 |
| te1 | TE1 | AF348319 | terminal ear1 | AAAA01003386 |
| trpA | tryptophan synthase, alpha | X76713 | trytophan synthase a | CL004278.147 |
| tse | endoxylanase, tapetum-specific | AF149016 | tapetum specific endoxylanase1 | AAAA01015527 |
| y1 | phytoene synthase | U3263.1 | yellow1 | AAAA01004470.1 |
| zag2 | Zea Agamous 2 transcrition factor | X80206 | Zea Agamous2 | AAAA01000742.1 |
| zmm1 | MADS-box transcription factor | X81199 | Zea Mays MADS-box protein 1 | AAAA01000742.1 |
| zog1
|
cis-zeatin-O-glycosyltransferase
|
AF466203
|
cis-zeatin-O-glycosyltransferse1
|
CL010916.37.36
|
