Automated Detection of Informative Combined Effects in Genetic Association Studies of Complex Traits

Table 1.

Application of DICE to the Association Between Myocardial Infarction and Nine Polymorphisms of the SELP Gene, Using a Codominant Coding Scheme




Modela

AICci

Δib

#parc

Δsd
Step 0 y = intercept + country 1590.07 0.00 2
Step 1 T715P 1582.73 0.00 3 7.35
country*T715P 1584.16 1.44 4 5.91
country*T-1817C 1589.49 6.76 4 0.58
T741T 1589.98 7.25 3 0.10
Step 2 T715P*T741T 1577.34 0.00 5 5.39
T715P*N562D 1580.28 2.94 5 2.45
T715P*V599L 1580.41 3.07 5 2.32
country*N562D 1580.54 3.20 5 2.19
Step 3e country*N562D 1576.27 0.00 7 1.07
N562D 1576.35 0.08 6 0.99
T741T*T-1817C 1577.34 1.06 7 0.00
T715P*N562D 1577.42 1.14 7 -0.07
Step 3bisf S290N *N562Dg 1570.84 0.00 8 6.50
country*S290N*N562D 1572.13 1.29 11 5.21
T-1817C*N562Dg 1572.52 1.68 8 4.82
T741T*S290N*N562D 1573.39 2.55 11 3.95
Step 4/path1 S290N*N562D*V599L 1563.42 0.00 12 7.42
T-1817C 1571.20 7.78 9 -0.36
country*T-1817C 1571.32 7.90 10 -0.48
N562D*-485I/D 1571.85 8.42 10 -1.01
Step 4/path2e N562D*A-1969G 1572.80 0.00 10 -0.27
N562D*S290N 1573.11 0.31 10 -0.59
N562D*-485I/D 1573.50 0.70 10 -0.98
-485I/D 1573.58 0.78 9 -1.06
Step 4bis/path2f S290N*N562D*V599L 1566.15 0.00 14 6.37
country*C-2123G*S290N 1573.84 7.69 14 -1.32
N562D*-485I/D+N562D*S290N 1574.07 7.92 12 -1.55
country*C-2123G+country*S290N 1574.18 8.03 12 -1.65
Conditional exclusion: deletion of T-1817C*N562D and T-1817C
Stop for both paths
Final model in both paths: y = country + T715P*T741T + S290N*N562D*V599L



  • n = 1147. Each model represents an update of the best approximating model identified at the previous step. The four best models within each step are shown. In bold are the best model(s) retained at each step

  • a Symbols are as follows: y is the outcome, “+” means addition of term(s), “*” means interaction (implying that all the terms of lower order are included in the model according to the principle of marginality)

  • b Δi = AICci - minAICc

  • c Number of parameters in the model

  • d Δs = minAICc(s-l) - minAICc(s)

  • e Nc model satisfying the composite condition

  • f Combinations of two markers

  • g Tie models

This Article

  1. Genome Res. 13: 1952-1960

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