Table 7.
Overall Performance on Chromosomes 4, 21, and 22 with TSSs Determined Based on Mapped Full-Length cDNA Sequences From DBTSS (Sugano Laboratory)
|
|
TP |
FP |
Total # of TSSs |
Total # of predictions |
Se |
ppv |
ASM |
CC |
|---|---|---|---|---|---|---|---|---|
| Dragon GSF | 228 | 175 | 576 | 2627 | 0.3958 | 0.5657 | 1.4545 | 0.4732 |
| FirstEF | 270 | 619 | 576 | 7451 | 0.4687 | 0.3037 | 3.7273 | 0.3773 |
| FirstEF (CpG+) | 264 | 380 | 576 | 4683 | 0.4583 | 0.4099 | 2.8182 | 0.4335 |
| Eponine
|
186
|
130
|
576
|
5178
|
0.3229
|
0.5886
|
2.0000
|
0.4360
|
-
The maximum allowed distance between the predicted TSS and real TSS is 250 nt
