Table 6.
Overall Performance on Chromosomes 4, 21, and 22 with TSSs Determined Based on Mapped Full-Length cDNA Sequences from DBTSS (Sugano Laboratory) and the Counting Criterion From Fickett and Hatzigeorgiou (1997)
|
|
TP |
FP |
Total # of TSSs |
Total # of predictions |
Se |
ppv |
ASM |
CC |
|---|---|---|---|---|---|---|---|---|
| Dragon GSF | 162 | 213 | 576 | 2627 | 0.2812 | 0.4320 | 2.0000 | 0.3486 |
| FirstEF | 166 | 718 | 576 | 7451 | 0.2881 | 0.1877 | 3.7273 | 0.2326 |
| FirstEF (CpG+) | 162 | 477 | 576 | 4683 | 0.2812 | 0.2535 | 2.9091 | 0.2670 |
| Eponine
|
156
|
160
|
576
|
5178
|
0.2708
|
0.4936
|
1.3636
|
0.3657
|
-
According to the criterion of Fickett and Hatzigeorgiou (1997), a known gene is counted as a TP prediction if in the region [-200,+100] relative to the real TSS there were predicted TSSs. All other predictions falling into the region [+101, EndOfGene] relative to the real TSS for the known gene are counted as FP predictions
