Table 4.
Overall Performance on Chromosomes 4, 21, and 22 with TSSs Determined Based on Mapped Full-Length cDNA Sequences From DBTSS (Sugano Laboratory)
|
|
TP |
FP |
Total # of TSSs |
Total # of predictions |
Se |
ppv |
ASM |
CC |
|---|---|---|---|---|---|---|---|---|
| Dragon GSF | 375 | 107 | 576 | 2627 | 0.6510 | 0.7780 | 1.2727 | 0.7117 |
| FirstEF | 453 | 476 | 576 | 7451 | 0.7865 | 0.4876 | 3.4545 | 0.6193 |
| FirstEF (CpG+) | 439 | 242 | 576 | 4683 | 0.7622 | 0.6446 | 2.1818 | 0.7009 |
| Eponine
|
250
|
83
|
576
|
5178
|
0.4340
|
0.7508
|
3.0909
|
0.5708
|
-
The maximum allowed distance between the predicted TSS and real TSS is 2000 nt
