Table 3.
Results on Chromosome 22 With TSSs Determined Based on Mapped Full-Length cDNA Sequences From DBTSS (Sugano Laboratory)
|
|
TP |
FP |
Total # of TSSs |
Total # of predictions |
Se |
ppv |
ASM |
CC |
|---|---|---|---|---|---|---|---|---|
| Dragon GSF | 134 | 35 | 183 | 898 | 0.7322 | 0.7929 | 1.2727 | 0.7620 |
| FirstEF | 159 | 199 | 183 | 2595 | 0.8689 | 0.4441 | 3.3636 | 0.6212 |
| FirstEF (CpG+) | 153 | 74 | 183 | 1428 | 0.8361 | 0.6740 | 2.1818 | 0.7507 |
| Eponine
|
84
|
31
|
183
|
2066
|
0.4590
|
0.7304
|
3.1818
|
0.5790
|
-
The maximum allowed distance between the predicted TSS and real TSS is 2000 nt
