Table 2.
Results on Chromosome 21 With TSSs Determined Based on Mapped Full-Length cDNA Sequences From DBTSS (Sugano Laboratory)
|
|
TP |
FP |
Total # of TSSs |
Total # of predictions |
Se |
ppv |
ASM |
CC |
|---|---|---|---|---|---|---|---|---|
| Dragon GSF | 62 | 17 | 89 | 383 | 0.6966 | 0.7848 | 1.2727 | 0.7394 |
| FirstEF | 74 | 108 | 89 | 1236 | 0.8315 | 0.4066 | 3.7273 | 0.5814 |
| FirstEF (CpG+) | 69 | 58 | 89 | 746 | 0.7753 | 0.5433 | 2.6364 | 0.6490 |
| Eponine
|
46
|
16
|
89
|
816
|
0.5169
|
0.7419
|
2.3636
|
0.6193
|
-
The maximum allowed distance between the predicted TSS and real TSS is 2000 nt
