Table 1.
Results on Chromosome 4 With TSSs Determined Based on Mapped Full-Length cDNA Sequences From DBTSS (Sugano Laboratory)
|
|
TP |
FP |
Total # of TSSs |
Total # of predictions |
Se |
ppv |
ASM |
CC |
|---|---|---|---|---|---|---|---|---|
| Dragon GSF | 179 | 55 | 304 | 1349 | 0.5888 | 0.7650 | 1.6364 | 0.6711 |
| FirstEF | 220 | 169 | 304 | 3620 | 0.7237 | 0.5656 | 3.4545 | 0.6398 |
| FirstEF (CpG+) | 217 | 110 | 304 | 2509 | 0.7138 | 0.6636 | 1.9091 | 0.6883 |
| Eponine
|
120
|
36
|
304
|
2296
|
0.3947
|
0.7692
|
3.0000
|
0.5510
|
-
The maximum allowed distance between the predicted TSS and real TSS is 2000 nt
