Biopipe: A Flexible Framework for Protocol-Based Bioinformatics Analysis

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Figure 2
Figure 2

(1) The I/O component of Biopipe. The design of I/OHandlers allows different input and output sources to be plugged in for analysis. (2) The modular breakdown of the Analysis component. Inputs fetched via the I/OHandlers are passed to the Analysis component as in-memory objects. Wrapper and parser modules reside outside of Biopipe, and the modular design allows for different wrappers and parsers to be swapped into the runnable, which acts as an interface to the Biopipe system. The modular design allows for swapping of different wrappers and parsers into the runnable.

This Article

  1. Genome Res. 13: 1904-1915

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